Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.F00633.1 |
Family | GH28 |
Protein Properties | Length: 361 Molecular Weight: 39164 Isoelectric Point: 9.2276 |
Chromosome | Chromosome/Scaffold: 6 Start: 8339842 End: 8341582 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 54 | 358 | 0 |
GACRSKGTNVIVIPSGTYLLGPVVLTGPCNGAIEFQIKGTLRASNSPQLGIDHWITFRFIDRLRITGGVLDGQGAASWPCRSQVKITNVLCDFLPLCVYF HQTMRLDFVTKAWIRHVTSLNSKNFHFNLFSCKDITFDHVTITAPEDSPNTDGIHMGRSSNVFVRDSVISTGDDCISLGPGSKNIKVTGIACGPGHGISV GSLGGTPNEPPVTTVFVRNCTFTDTQNGMRIKTRAPSYQGVVQDITFQDIIVKNAGNPIIIDQQYCPSKKCRNQASKVKISDVGFRNIRGTTSSLVAVNI NCSPA |
Full Sequence |
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Protein Sequence Length: 361 Download |
MEWRFTFPTV SLLILMLALT SNQAQARVFD IKKFGAVGDG KTDNSKALYD VWKGACRSKG 60 TNVIVIPSGT YLLGPVVLTG PCNGAIEFQI KGTLRASNSP QLGIDHWITF RFIDRLRITG 120 GVLDGQGAAS WPCRSQVKIT NVLCDFLPLC VYFHQTMRLD FVTKAWIRHV TSLNSKNFHF 180 NLFSCKDITF DHVTITAPED SPNTDGIHMG RSSNVFVRDS VISTGDDCIS LGPGSKNIKV 240 TGIACGPGHG ISVGSLGGTP NEPPVTTVFV RNCTFTDTQN GMRIKTRAPS YQGVVQDITF 300 QDIIVKNAGN PIIIDQQYCP SKKCRNQASK VKISDVGFRN IRGTTSSLVA VNINCSPAVP 360 * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 4.0e-78 | 6 | 360 | 358 | + polygalacturonase | ||
PLN02218 | PLN02218 | 5.0e-79 | 31 | 360 | 340 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-83 | 27 | 360 | 341 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-98 | 56 | 360 | 306 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 5.0e-109 | 1 | 360 | 376 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89476.1 | 0 | 18 | 360 | 20 | 353 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 18 | 360 | 20 | 353 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89479.1 | 0 | 23 | 360 | 24 | 353 | polygalacturonase [Salix gilgiana] |
RefSeq | XP_002282563.1 | 0 | 28 | 360 | 27 | 354 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002329175.1 | 0 | 10 | 360 | 11 | 353 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-17 | 41 | 352 | 19 | 344 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.000000000000005 | 53 | 347 | 15 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000000005 | 53 | 347 | 15 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000000005 | 53 | 347 | 15 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.000000000000005 | 53 | 347 | 15 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |