Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.F02531.1 |
Family | GH28 |
Protein Properties | Length: 382 Molecular Weight: 40749.1 Isoelectric Point: 8.1627 |
Chromosome | Chromosome/Scaffold: 6 Start: 34948311 End: 34950829 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 38 | 368 | 0 |
AACISSSKLSILTVPAKKTFLLKPVTFSGPCQPEYMYVLVSGNIAAPNSMTDYSGYQTNSWLAFSNVSGLMITGTGIIDGKGSGWWSQPCIGNASNALTF YRCTRLVLNGLRHVNSPRSHIALTSCQFVTISNIHISAPATSPNTDGIDISGSTHVYVRDSFIGTGDDCIAISAGSSHINVTRITCGPGHGISIGSLGAH GENDTVENVTVQNCTLKGTMTGVRIKTWQGGIGYARKITFNKIRFIRVDNPIIIDQYYCPTQVGCKNETSGIRVSDISYSVIYGTSVTDKVINLSCDQNF GCSNIVLDHVYITSTVPNKKAYSYCFNAHGK |
Full Sequence |
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Protein Sequence Length: 382 Download |
MVNCGASTAS TSFDVLSYGA VGDGKTDDSP AFLEAWNAAC ISSSKLSILT VPAKKTFLLK 60 PVTFSGPCQP EYMYVLVSGN IAAPNSMTDY SGYQTNSWLA FSNVSGLMIT GTGIIDGKGS 120 GWWSQPCIGN ASNALTFYRC TRLVLNGLRH VNSPRSHIAL TSCQFVTISN IHISAPATSP 180 NTDGIDISGS THVYVRDSFI GTGDDCIAIS AGSSHINVTR ITCGPGHGIS IGSLGAHGEN 240 DTVENVTVQN CTLKGTMTGV RIKTWQGGIG YARKITFNKI RFIRVDNPII IDQYYCPTQV 300 GCKNETSGIR VSDISYSVIY GTSVTDKVIN LSCDQNFGCS NIVLDHVYIT STVPNKKAYS 360 YCFNAHGKYS HTRPAVTCLL K* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-90 | 9 | 366 | 367 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 7.0e-91 | 9 | 373 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 2.0e-108 | 8 | 379 | 376 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 1.0e-110 | 13 | 372 | 360 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-112 | 13 | 370 | 365 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD28723.1 | 0 | 10 | 381 | 13 | 392 | Glycoside hydrolase, family 28 [Medicago truncatula] |
EMBL | CBI36306.1 | 0 | 3 | 381 | 114 | 495 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266797.1 | 0 | 3 | 381 | 8 | 374 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 13 | 379 | 27 | 394 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 13 | 379 | 28 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-21 | 114 | 322 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-21 | 114 | 322 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-21 | 114 | 322 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-21 | 114 | 322 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-21 | 114 | 322 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY961682 | 266 | 9 | 265 | 0 |
CA785641 | 194 | 157 | 350 | 0 |
FN025824 | 205 | 175 | 379 | 0 |
DY964976 | 232 | 9 | 231 | 0 |
EH673898 | 227 | 9 | 226 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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