| Basic Information | |
|---|---|
| Species | Eucalyptus grandis |
| Cazyme ID | Eucgr.F03132.1 |
| Family | AA3 |
| Protein Properties | Length: 571 Molecular Weight: 62744.2 Isoelectric Point: 9.268 |
| Chromosome | Chromosome/Scaffold: 6 Start: 40724576 End: 40728699 |
| Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA3 | 26 | 565 | 0 |
| SSLSSSSNGVNKAYDYIIVGGGTAGCPLAATLSQNFSVLLLERGGVPFANANVSFLENFHLTLADTSKTSASQFFSSTDGVLNSRARVLGGGTCINAGFY TRASTEFIRKVGWDEKLVNESYPWVEKQIVHRPDFAPWQRAFKDSLLDVGVSPFNGFTYDHLYGTKVGGTIFDRYGRRHTAAELLATANPQKLTVLIHAT VQKIVFDTRGSRPKAVGVMFKDENGHGHQAFLKSNLQSEVILSSGAIGSPQLLLLSGIGPKADLEKLNISTVLDQEFVGKDIVDNPMNTIFVPTNGPIHQ SLIQTVGITKLGVYLESSSGFGQSNDSLHCHHGIVSAEIGQLSTIPPKQRTPEAIRAYAQNKRDLPHEVFRGGFILEKLANPSSKGELRLINTNVDDNPW ITFNYFSHPHDLERCVDGIRLATKVVQSKYFTELTRVDKQTTEKLLNISVKANVNLIPKHTNDTKSLEQFCRDTVITIWHYHGGCHVGKVVDHENKVLGV DQLRVVDGSTFSESPGTNPQATVMMMGRYMGAKILRNRLG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 571 Download |
| MFYNAGKPNY SEYRYPFIRR ASTFSSSLSS SSNGVNKAYD YIIVGGGTAG CPLAATLSQN 60 FSVLLLERGG VPFANANVSF LENFHLTLAD TSKTSASQFF SSTDGVLNSR ARVLGGGTCI 120 NAGFYTRAST EFIRKVGWDE KLVNESYPWV EKQIVHRPDF APWQRAFKDS LLDVGVSPFN 180 GFTYDHLYGT KVGGTIFDRY GRRHTAAELL ATANPQKLTV LIHATVQKIV FDTRGSRPKA 240 VGVMFKDENG HGHQAFLKSN LQSEVILSSG AIGSPQLLLL SGIGPKADLE KLNISTVLDQ 300 EFVGKDIVDN PMNTIFVPTN GPIHQSLIQT VGITKLGVYL ESSSGFGQSN DSLHCHHGIV 360 SAEIGQLSTI PPKQRTPEAI RAYAQNKRDL PHEVFRGGFI LEKLANPSSK GELRLINTNV 420 DDNPWITFNY FSHPHDLERC VDGIRLATKV VQSKYFTELT RVDKQTTEKL LNISVKANVN 480 LIPKHTNDTK SLEQFCRDTV ITIWHYHGGC HVGKVVDHEN KVLGVDQLRV VDGSTFSESP 540 GTNPQATVMM MGRYMGAKIL RNRLGRAAAV * 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam05199 | GMC_oxred_C | 2.0e-26 | 407 | 552 | 151 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
| TIGR03970 | Rv0697 | 2.0e-33 | 40 | 552 | 562 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
| TIGR01810 | betA | 4.0e-35 | 40 | 563 | 574 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
| COG2303 | BetA | 1.0e-47 | 39 | 568 | 582 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| PLN02785 | PLN02785 | 0 | 5 | 570 | 567 | + Protein HOTHEAD | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI35951.1 | 0 | 7 | 570 | 29 | 593 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002275841.1 | 0 | 7 | 570 | 20 | 584 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002327436.1 | 0 | 28 | 570 | 6 | 547 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002329018.1 | 0 | 9 | 570 | 28 | 591 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527404.1 | 0 | 5 | 569 | 31 | 596 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3gdp_B | 0 | 38 | 563 | 26 | 517 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3gdp_A | 0 | 38 | 563 | 26 | 517 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3gdn_B | 0 | 38 | 563 | 26 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
| PDB | 3gdn_A | 0 | 38 | 563 | 26 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
| PDB | 1ju2_B | 0 | 38 | 563 | 26 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO796743 | 532 | 40 | 571 | 0 |
| HO852522 | 376 | 191 | 566 | 0 |
| CK271873 | 316 | 38 | 353 | 0 |
| ES808127 | 408 | 135 | 540 | 0 |
| ES795368 | 336 | 156 | 490 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
