Basic Information | |
---|---|
Species | Eucalyptus grandis |
Cazyme ID | Eucgr.F03696.1 |
Family | CE8 |
Protein Properties | Length: 364 Molecular Weight: 40473.4 Isoelectric Point: 6.7101 |
Chromosome | Chromosome/Scaffold: 6 Start: 45213013 End: 45214949 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 65 | 357 | 0 |
ILVDKNGRGDSITVQGAVDMVPENNSQRVKILILPGTYREKVHVPSSKPYISFIGDEDQSSKTTISWHDKASDKQTDGCELGTYRSASVTVESDFFCATG ITFENTVVAVPGGYGMQAVALRVSGDKAMFYRVRVLGTQDTLLDDTGSHYFYQCYIQGSVDFIFGRSTSLYEECVIHSTATNFGAIAAHHRDSPSDDSGF SFVNCVINGTGNIYLGRAWGDYSRVVYSYCYLDNIITPPGWSDWNHPYRQKTAVFGEYQCSGRGADTRGRVPWSKTFSHEEARGFLDKKFIQG |
Full Sequence |
---|
Protein Sequence Length: 364 Download |
VEAVSRRLGR MAMDLTSALL GAVVILSVLS EVEVMRTMAR KDFISWDDVR VNEQEKGRPN 60 RSGVILVDKN GRGDSITVQG AVDMVPENNS QRVKILILPG TYREKVHVPS SKPYISFIGD 120 EDQSSKTTIS WHDKASDKQT DGCELGTYRS ASVTVESDFF CATGITFENT VVAVPGGYGM 180 QAVALRVSGD KAMFYRVRVL GTQDTLLDDT GSHYFYQCYI QGSVDFIFGR STSLYEECVI 240 HSTATNFGAI AAHHRDSPSD DSGFSFVNCV INGTGNIYLG RAWGDYSRVV YSYCYLDNII 300 TPPGWSDWNH PYRQKTAVFG EYQCSGRGAD TRGRVPWSKT FSHEEARGFL DKKFIQGDRW 360 LRL* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 3.0e-108 | 64 | 361 | 301 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 5.0e-109 | 64 | 362 | 299 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 1.0e-115 | 59 | 361 | 305 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-128 | 38 | 363 | 336 | + pectinesterase family protein | ||
PLN02671 | PLN02671 | 0 | 41 | 363 | 328 | + pectinesterase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEE67559.1 | 0 | 65 | 363 | 75 | 398 | hypothetical protein OsJ_25062 [Oryza sativa Japonica Group] |
RefSeq | NP_200370.1 | 0 | 20 | 363 | 15 | 380 | QRT1 (QUARTET 1); pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002264297.1 | 0 | 43 | 363 | 34 | 359 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002298857.1 | 0 | 60 | 363 | 15 | 318 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522727.1 | 0 | 12 | 363 | 23 | 383 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 65 | 362 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 7e-40 | 66 | 362 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 0.000000000005 | 77 | 238 | 20 | 188 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.000000000005 | 77 | 238 | 20 | 188 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 0.000000000005 | 77 | 238 | 20 | 188 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
GH171677 | 253 | 112 | 364 | 0 |
EL423097 | 239 | 43 | 265 | 0 |
FK024268 | 215 | 150 | 364 | 0 |
EE163480 | 239 | 127 | 364 | 0 |
GO040593 | 230 | 134 | 363 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|