Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.G02541.1 |
Family | PL1 |
Protein Properties | Length: 437 Molecular Weight: 49184.2 Isoelectric Point: 10.2176 |
Chromosome | Chromosome/Scaffold: 7 Start: 43905997 End: 43907715 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 156 | 354 | 0 |
IIFAGSMVIRLNQELIMTSDKTIDARGANVHIAYGAGITLQFIRNVIIHGLHIHDIVRGSGGLIRDAHDHVGLRTASDGDGISIFGSSHLWIDHVSMSAC SDGLIDAIQGSTAITISNCHFTHHNEVMLFGASDGYSQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIA |
Full Sequence |
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Protein Sequence Length: 437 Download |
MNRHVCFFLF FSSFAVLVPS LQANIEEFDE YWAKRAEEAQ KDALKAYDPH PETVTSLFNA 60 KVDKAVRGNN STRRQLKKYK GPCLATNPID RCWRCNRNWA RNRKRLANCV LGFGRKTRGG 120 KRGWFYVVTD SSDNDMVNPK PGTLRHAVVQ KGPLWIIFAG SMVIRLNQEL IMTSDKTIDA 180 RGANVHIAYG AGITLQFIRN VIIHGLHIHD IVRGSGGLIR DAHDHVGLRT ASDGDGISIF 240 GSSHLWIDHV SMSACSDGLI DAIQGSTAIT ISNCHFTHHN EVMLFGASDG YSQDQIMQIT 300 VAFNHFGRGL VQRMPRCRWG FFHVVNNDYT HWLMYAIGGS QHPTIISQGN RFIAPPNIAA 360 KEVTKRDYAT EDQWKNWLWK SEGDLMMNGA FFVNSGNPRA RFPFSRRDVI KAKPGTYVRR 420 LTRFAGKLGC RVGRPC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 4.0e-18 | 24 | 76 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 9.0e-29 | 174 | 401 | 241 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-61 | 168 | 352 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 6.0e-70 | 162 | 356 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 16 | 436 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 16 | 436 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 15 | 436 | 18 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 10 | 436 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 1 | 436 | 4 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 87 | 426 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 87 | 426 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-21 | 144 | 343 | 38 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 0.0000000000008 | 220 | 364 | 181 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 3krg_A | 0.000000000001 | 231 | 364 | 180 | 337 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |