y
Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.G03373.1 |
Family | GH28 |
Protein Properties | Length: 378 Molecular Weight: 40904.8 Isoelectric Point: 9.5522 |
Chromosome | Chromosome/Scaffold: 7 Start: 51764790 End: 51767040 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 38 | 367 | 0 |
VACSSEGAVLVVPKNRIYHLKPITFSGPCKSNLTFKVYGRIKASVRLSDYDKDRAHWLMFNNLTDFRMEGGGFINGNGRKWWANSCKINKTLPCKAAPTA MTFYECKNLRVADLIIQNAQQMHLLFQKCVNVIALNLLVSAPEKSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVQATDIVCGPGHGISIGSL GAGKSTDYVSNVLVNRARLSGTTNGVRIKTWQGGSGYAKNITFQNISMRNVTNPIIINQNYCDQNEPCPEQASAVQVSNVVYKNIKGTSASEVAINFDCS KSYPCKGILLQNIGLVSNSGESTKASSLNV |
Full Sequence |
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Protein Sequence Length: 378 Download |
MMRRLASASA TKMVSVDDYG AKGDGGDDSE AFKKAWNVAC SSEGAVLVVP KNRIYHLKPI 60 TFSGPCKSNL TFKVYGRIKA SVRLSDYDKD RAHWLMFNNL TDFRMEGGGF INGNGRKWWA 120 NSCKINKTLP CKAAPTAMTF YECKNLRVAD LIIQNAQQMH LLFQKCVNVI ALNLLVSAPE 180 KSPNTDGIHV TGTQNILIKN CVIRTGDDCI SIVSGSKNVQ ATDIVCGPGH GISIGSLGAG 240 KSTDYVSNVL VNRARLSGTT NGVRIKTWQG GSGYAKNITF QNISMRNVTN PIIINQNYCD 300 QNEPCPEQAS AVQVSNVVYK NIKGTSASEV AINFDCSKSY PCKGILLQNI GLVSNSGEST 360 KASSLNVRYT KMGNVYP* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 6.0e-91 | 29 | 377 | 356 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 2.0e-91 | 29 | 368 | 347 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 9.0e-117 | 40 | 367 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 5.0e-136 | 29 | 377 | 352 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-137 | 29 | 377 | 354 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC26512.1 | 0 | 9 | 377 | 83 | 456 | polygalacturonase precursor [Cucumis melo] |
RefSeq | XP_002308956.1 | 0 | 8 | 377 | 71 | 440 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002313308.1 | 0 | 6 | 377 | 1 | 373 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517823.1 | 0 | 1 | 377 | 65 | 444 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529616.1 | 0 | 7 | 377 | 101 | 471 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-21 | 107 | 356 | 115 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 1e-20 | 105 | 325 | 74 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-20 | 105 | 325 | 74 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-20 | 105 | 325 | 74 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-20 | 105 | 325 | 74 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EE093402 | 256 | 87 | 342 | 0 |
EE091344 | 242 | 111 | 352 | 0 |
EX261408 | 262 | 9 | 269 | 0 |
FL511812 | 213 | 112 | 324 | 0 |
EX261408 | 56 | 266 | 321 | 0.000001 |
Sequence Alignments (This image is cropped. Click for full image.) |
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