Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.H00056.1 |
Family | CE8 |
Protein Properties | Length: 299 Molecular Weight: 33495.5 Isoelectric Point: 7.0168 |
Chromosome | Chromosome/Scaffold: 8 Start: 524398 End: 526728 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 7 | 287 | 0 |
PSGQSGTFTTVQSAIDAVPENNNHWFCIYVKEGTYREKVQIPKNKPFIILKGRGKRKTEIVWDDHETVAQSPTFTSSADNIVVKSISFRNSYNNPVNENP KVPAAAAMILGDKSYFYRVGFSGLQDTLWDVEGRHYFKRCTIQGAVDFIFGGGQSIYEGCAISVLGNALPGLSGFITAQGRENEQDTDGFVFKNCNVFGS GSAKLGRPWRGYARVLFYHSNFTDVVDPKGWDAWSFVGREYQLTFVEYGCYGPGADMSKRVSWERKLDDSSVQQMTSLSYV |
Full Sequence |
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Protein Sequence Length: 299 Download |
WHIRVDPSGQ SGTFTTVQSA IDAVPENNNH WFCIYVKEGT YREKVQIPKN KPFIILKGRG 60 KRKTEIVWDD HETVAQSPTF TSSADNIVVK SISFRNSYNN PVNENPKVPA AAAMILGDKS 120 YFYRVGFSGL QDTLWDVEGR HYFKRCTIQG AVDFIFGGGQ SIYEGCAISV LGNALPGLSG 180 FITAQGRENE QDTDGFVFKN CNVFGSGSAK LGRPWRGYAR VLFYHSNFTD VVDPKGWDAW 240 SFVGREYQLT FVEYGCYGPG ADMSKRVSWE RKLDDSSVQQ MTSLSYVDSE GWIDRTPF* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02682 | PLN02682 | 6.0e-79 | 3 | 293 | 304 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 7.0e-80 | 3 | 293 | 291 | + putative pectinesterase | ||
PLN02480 | PLN02480 | 4.0e-92 | 3 | 293 | 292 | + Probable pectinesterase | ||
PLN02176 | PLN02176 | 2.0e-115 | 3 | 297 | 298 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 2.0e-176 | 3 | 297 | 298 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB01354.1 | 0 | 2 | 297 | 33 | 328 | pectin methylesterase-like protein [Arabidopsis thaliana] |
RefSeq | NP_189055.1 | 0 | 2 | 297 | 33 | 332 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002263748.1 | 0 | 3 | 297 | 32 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323773.1 | 0 | 3 | 297 | 1 | 288 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518106.1 | 0 | 3 | 298 | 48 | 336 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 5e-37 | 11 | 298 | 16 | 313 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-32 | 11 | 269 | 12 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 4e-22 | 13 | 282 | 17 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 4e-22 | 13 | 282 | 17 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 4e-22 | 13 | 282 | 17 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EE476551 | 221 | 2 | 218 | 0 |
DV984237 | 287 | 14 | 293 | 0 |
DK492309 | 211 | 2 | 210 | 0 |
DK563509 | 229 | 76 | 298 | 0 |
DK492309 | 40 | 207 | 246 | 0.00001 |
Sequence Alignments (This image is cropped. Click for full image.) |
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