Basic Information | |
---|---|
Species | Eucalyptus grandis |
Cazyme ID | Eucgr.H00250.1 |
Family | GH28 |
Protein Properties | Length: 387 Molecular Weight: 41244.9 Isoelectric Point: 8.9526 |
Chromosome | Chromosome/Scaffold: 8 Start: 3539065 End: 3540715 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 47 | 373 | 0 |
KAACGSAQAATIYLPKGRYVLKAVEFRGPCKSRMTVKIDGTLVAPTDYWALGNSGYWILFRQVNKLTVVGGKLDAKGAGYWACKNSGRSCPPGARSITFN WANDIVLSGLTSINSQETHIVINSCNNAVVRNVKVIAPDQSPNTDGIHVQSSTGVTITGSTLQTGDDCISIGPGTTNLYMSHIKCGPGHGISIGSLARDA TEDGVQNVTLTNAVFTGSDNGVRIKSWARPSTSFVRNVLFQNIVMTNVKNPIIIDQNYCPNNQGCPLQSSGAKISQVTYRNIRGTSATQNAVTFDCSGST PCREIRLQDIHLTYMNRAATSSCKNIG |
Full Sequence |
---|
Protein Sequence Length: 387 Download |
MAKQVIFLML TCLVLISPTE ADYNVVRYGA KPDGATDATE AFLRAWKAAC GSAQAATIYL 60 PKGRYVLKAV EFRGPCKSRM TVKIDGTLVA PTDYWALGNS GYWILFRQVN KLTVVGGKLD 120 AKGAGYWACK NSGRSCPPGA RSITFNWAND IVLSGLTSIN SQETHIVINS CNNAVVRNVK 180 VIAPDQSPNT DGIHVQSSTG VTITGSTLQT GDDCISIGPG TTNLYMSHIK CGPGHGISIG 240 SLARDATEDG VQNVTLTNAV FTGSDNGVRI KSWARPSTSF VRNVLFQNIV MTNVKNPIII 300 DQNYCPNNQG CPLQSSGAKI SQVTYRNIRG TSATQNAVTF DCSGSTPCRE IRLQDIHLTY 360 MNRAATSSCK NIGGTSSGLL VPQSCL* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 4.0e-92 | 50 | 372 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 7.0e-96 | 19 | 383 | 372 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-104 | 25 | 386 | 370 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-109 | 23 | 385 | 369 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 5.0e-172 | 5 | 386 | 383 | + polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309713.1 | 0 | 1 | 386 | 1 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 1 | 386 | 1 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529096.1 | 0 | 21 | 386 | 23 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529097.1 | 0 | 7 | 386 | 9 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529098.1 | 0 | 1 | 386 | 1 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 8e-22 | 36 | 372 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 8e-22 | 36 | 372 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 8e-22 | 36 | 372 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 8e-22 | 36 | 372 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 8e-22 | 36 | 372 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |