| Basic Information | |
|---|---|
| Species | Eucalyptus grandis |
| Cazyme ID | Eucgr.H00253.1 |
| Family | GH28 |
| Protein Properties | Length: 381 Molecular Weight: 39314.1 Isoelectric Point: 7.9706 |
| Chromosome | Chromosome/Scaffold: 8 Start: 3582127 End: 3584538 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 43 | 366 | 0 |
| ACGSTSAATVYVPQGRFLVQSASFNGPCKNSAITVRIDGTLVAPSNYNLNGNTGNWIILSHVTGVSVIGGTLDGQGKGLWACKLSRKSCPSGATNLEISN SQNVLVSGLSSLNSQMFHIVINACQNVKMQGVKVSASGTSPNTDGIHIGASTGVTILNSKIGTGDDCVSIGPGSNNLWIENIACGPGHGISIGSLGKDQQ EDGVQNVTVKTVTFTGTQNGVRIKSWARSSNSFARNILFQHATMNNVQNPIIIDQNYCPDSGCPSQASGVRVSDVTYQDIHGTSATEVAVKFDCSSKYPC TGIRMQDVKLTYLNQVATASCAHA | |||
| Full Sequence |
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| Protein Sequence Length: 381 Download |
| MLLSESPSPA NAASVQYNVV SLGAKADGKT DSSKAFLSAW VLACGSTSAA TVYVPQGRFL 60 VQSASFNGPC KNSAITVRID GTLVAPSNYN LNGNTGNWII LSHVTGVSVI GGTLDGQGKG 120 LWACKLSRKS CPSGATNLEI SNSQNVLVSG LSSLNSQMFH IVINACQNVK MQGVKVSASG 180 TSPNTDGIHI GASTGVTILN SKIGTGDDCV SIGPGSNNLW IENIACGPGH GISIGSLGKD 240 QQEDGVQNVT VKTVTFTGTQ NGVRIKSWAR SSNSFARNIL FQHATMNNVQ NPIIIDQNYC 300 PDSGCPSQAS GVRVSDVTYQ DIHGTSATEV AVKFDCSSKY PCTGIRMQDV KLTYLNQVAT 360 ASCAHAGGAA SGTEQPASCL * |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02793 | PLN02793 | 2.0e-84 | 19 | 356 | 347 | + Probable polygalacturonase |
| pfam00295 | Glyco_hydro_28 | 7.0e-86 | 44 | 354 | 313 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN02218 | PLN02218 | 3.0e-87 | 18 | 352 | 342 | + polygalacturonase ADPG |
| PLN02188 | PLN02188 | 8.0e-101 | 12 | 354 | 350 | + polygalacturonase/glycoside hydrolase family protein |
| PLN02155 | PLN02155 | 1.0e-123 | 10 | 354 | 346 | + polygalacturonase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAC22689.1 | 0 | 1 | 380 | 18 | 398 | polygalacturonase [Pyrus communis] |
| DDBJ | BAF42034.1 | 0 | 1 | 380 | 18 | 398 | polygalacturonase3 [Pyrus communis] |
| EMBL | CAH18935.1 | 0 | 1 | 380 | 18 | 398 | polygalacturonase [Pyrus communis] |
| RefSeq | XP_002529090.1 | 0 | 12 | 380 | 24 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529091.1 | 0 | 1 | 380 | 12 | 392 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 5e-22 | 112 | 353 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 2e-18 | 3 | 352 | 2 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1ib4_B | 0.000000000000005 | 145 | 325 | 114 | 294 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1ib4_A | 0.000000000000005 | 145 | 325 | 114 | 294 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1ia5_A | 0.000000000000005 | 145 | 325 | 114 | 294 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY281549 | 320 | 12 | 329 | 0 |
| JZ193571 | 290 | 12 | 301 | 0 |
| JZ191937 | 299 | 83 | 380 | 0 |
| JZ194028 | 281 | 78 | 357 | 0 |
| DY268186 | 316 | 12 | 325 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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