Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.H00254.1 |
Family | GH28 |
Protein Properties | Length: 367 Molecular Weight: 38324.3 Isoelectric Point: 9.51 |
Chromosome | Chromosome/Scaffold: 8 Start: 3612100 End: 3614300 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 26 | 355 | 0 |
ASACGSTRAASVYVPQGRFLVKSASFNGPCKNSAITVRIDGTLVAPSNYNVNGNARRWIVFRHVTGVSMIGGTLDGQGTGLWACKLSHKSCPIGATNLLI SNSQNILVRGLRSLNSQMFHIVINGCQNVKMQGVKVSASGTSPNTDGIHVGASTGVTILNSKIGTGDDCVSIGPGSNNLWIENVACGPGHGISIGSLGKT QQEDGVQNVTVKTVTFTGTQNGVRIKSWGRPSNGFARNILFQHAIMNNVQNPIIIDQNYCPHNSGCPGQASGVRVSDVTYQDIHGTSATSVAVKFDCSSK YPCTGIRMQDVKLTYRNKVATASCAHADGT |
Full Sequence |
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Protein Sequence Length: 367 Download |
QYNVVSLGAK ADGKTDSSKA FQSAWASACG STRAASVYVP QGRFLVKSAS FNGPCKNSAI 60 TVRIDGTLVA PSNYNVNGNA RRWIVFRHVT GVSMIGGTLD GQGTGLWACK LSHKSCPIGA 120 TNLLISNSQN ILVRGLRSLN SQMFHIVING CQNVKMQGVK VSASGTSPNT DGIHVGASTG 180 VTILNSKIGT GDDCVSIGPG SNNLWIENVA CGPGHGISIG SLGKTQQEDG VQNVTVKTVT 240 FTGTQNGVRI KSWGRPSNGF ARNILFQHAI MNNVQNPIII DQNYCPHNSG CPGQASGVRV 300 SDVTYQDIHG TSATSVAVKF DCSSKYPCTG IRMQDVKLTY RNKVATASCA HADGTASGLV 360 QPSSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 9.0e-90 | 29 | 357 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-92 | 3 | 362 | 367 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-99 | 4 | 366 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-109 | 2 | 365 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 1.0e-139 | 2 | 366 | 366 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC22689.1 | 0 | 2 | 366 | 34 | 398 | polygalacturonase [Pyrus communis] |
DDBJ | BAF42034.1 | 0 | 2 | 366 | 34 | 398 | polygalacturonase3 [Pyrus communis] |
EMBL | CAH18935.1 | 0 | 2 | 366 | 34 | 398 | polygalacturonase [Pyrus communis] |
RefSeq | XP_002529090.1 | 0 | 1 | 366 | 28 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529091.1 | 0 | 1 | 366 | 27 | 392 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-21 | 97 | 339 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 6e-18 | 3 | 338 | 22 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1hg8_A | 0.00000000000003 | 89 | 355 | 73 | 346 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1ib4_B | 0.00000000000006 | 65 | 315 | 73 | 298 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1ib4_A | 0.00000000000006 | 65 | 315 | 73 | 298 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY281549 | 315 | 2 | 315 | 0 |
JZ191937 | 299 | 68 | 366 | 0 |
JZ194028 | 287 | 63 | 349 | 0 |
JZ192826 | 286 | 66 | 351 | 0 |
JZ193571 | 285 | 2 | 286 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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