Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.H00255.1 |
Family | GH28 |
Protein Properties | Length: 403 Molecular Weight: 42290.6 Isoelectric Point: 8.0384 |
Chromosome | Chromosome/Scaffold: 8 Start: 3628465 End: 3632280 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 62 | 391 | 0 |
ASACGSMRAATIYVPRGRFLVRSASFKGPCKNLAITVRIDGTLVAPSNCNVNGDAGNWIVFRHVIGVSVIGGTLDGQGMDLWACKLSGKSCPSGATNLMI SNSENILVSGLSSLNSQMFHIVVSGCQNVKMQGVKVSNPGTSPNTDGIHITASTGVTIRNSKIGTGDDCVSIGPGTNNLWIENIACGPGHGISIGSLGQD QEEDGVQNVTVKTVTFTGTQNGLRIKSWARPSNGFARNILFQHAIMNNVQNPIIIDQNYCPDNSGCPTQASGVRVSDVTYQDIYGTSATLVAVNFDCSSK YPCTAIRMQDVKLTYWNQLATASCAHADGT |
Full Sequence |
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Protein Sequence Length: 403 Download |
MASTKSPNKG AVWPNCSNYL SNPSPMTSWT AYAASVQYNV VSFGAKADDT TDSSKAFQSA 60 WASACGSMRA ATIYVPRGRF LVRSASFKGP CKNLAITVRI DGTLVAPSNC NVNGDAGNWI 120 VFRHVIGVSV IGGTLDGQGM DLWACKLSGK SCPSGATNLM ISNSENILVS GLSSLNSQMF 180 HIVVSGCQNV KMQGVKVSNP GTSPNTDGIH ITASTGVTIR NSKIGTGDDC VSIGPGTNNL 240 WIENIACGPG HGISIGSLGQ DQEEDGVQNV TVKTVTFTGT QNGLRIKSWA RPSNGFARNI 300 LFQHAIMNNV QNPIIIDQNY CPDNSGCPTQ ASGVRVSDVT YQDIYGTSAT LVAVNFDCSS 360 KYPCTAIRMQ DVKLTYWNQL ATASCAHADG TASGLVQPSS CL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 8.0e-88 | 65 | 393 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-92 | 39 | 398 | 367 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-95 | 40 | 402 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 7.0e-107 | 32 | 401 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 8.0e-137 | 33 | 402 | 371 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 30 | 402 | 20 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | ABD33834.1 | 0 | 30 | 402 | 20 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
GenBank | ABV32553.1 | 0 | 30 | 402 | 20 | 393 | endopolygalacturonase [Prunus persica] |
DDBJ | BAF42034.1 | 0 | 33 | 402 | 29 | 398 | polygalacturonase3 [Pyrus communis] |
EMBL | CAH18935.1 | 0 | 33 | 402 | 29 | 398 | polygalacturonase [Pyrus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-25 | 133 | 375 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 5e-17 | 25 | 379 | 8 | 341 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 0.000000000000003 | 132 | 347 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000003 | 132 | 347 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000003 | 132 | 347 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JZ191937 | 299 | 104 | 402 | 0 |
DY281549 | 322 | 30 | 350 | 0 |
JZ194028 | 287 | 99 | 385 | 0 |
JZ193571 | 290 | 33 | 322 | 0 |
JZ192826 | 286 | 102 | 387 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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