Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.H00895.1 |
Family | GH28 |
Protein Properties | Length: 317 Molecular Weight: 34535.1 Isoelectric Point: 6.8778 |
Chromosome | Chromosome/Scaffold: 8 Start: 11095572 End: 11098013 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 83 | 294 | 1.19993e-41 |
AACSSQVESPVLYVPSGYSFMVQSTIFTGPCQGGIVFQVNSELMPPDGPESWPKGLSRRQWLVFYQVIGMSLQGDGLIDRKGEKWRDLPCKPHKEGNGTS LPGPCDSPIVSYKVLHELQLNSACAQKRNSPQFHFRFDNCRNVHIDSIFLSAPLGPNADGIHIENTIGVKIYNSVISNGDDCVSIGSGCYNVYVWNITCG PSHGIRFNSHNV |
Full Sequence |
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Protein Sequence Length: 317 Download |
MKLGRHESKI MGENMGSDQL CATYENVVTG HPPIPLPPPP SPSLAGPPGD HNRSTNVFDV 60 RTFGAVGGGG ADNTEAFKMV WDAACSSQVE SPVLYVPSGY SFMVQSTIFT GPCQGGIVFQ 120 VNSELMPPDG PESWPKGLSR RQWLVFYQVI GMSLQGDGLI DRKGEKWRDL PCKPHKEGNG 180 TSLPGPCDSP IVSYKVLHEL QLNSACAQKR NSPQFHFRFD NCRNVHIDSI FLSAPLGPNA 240 DGIHIENTIG VKIYNSVISN GDDCVSIGSG CYNVYVWNIT CGPSHGIRFN SHNVFLKHAS 300 MFIFSSNWCI INIYTN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 8.0e-32 | 85 | 311 | 243 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03010 | PLN03010 | 4.0e-33 | 58 | 291 | 238 | + polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-34 | 54 | 291 | 240 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 3.0e-39 | 53 | 291 | 242 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-46 | 53 | 291 | 245 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 49 | 291 | 80 | 321 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002276945.1 | 0 | 34 | 313 | 44 | 314 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002320271.1 | 0 | 49 | 291 | 34 | 275 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512560.1 | 0 | 57 | 313 | 74 | 320 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002515219.1 | 0 | 51 | 291 | 135 | 374 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2uvf_B | 0.003 | 57 | 271 | 156 | 411 | A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid |
PDB | 2uvf_A | 0.003 | 57 | 271 | 156 | 411 | A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid |
PDB | 2uve_B | 0.003 | 57 | 271 | 156 | 411 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
PDB | 2uve_A | 0.003 | 57 | 271 | 156 | 411 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
PDB | 1rmg_A | 0.009 | 54 | 291 | 17 | 226 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EY170913 | 233 | 55 | 286 | 0 |
DY668959 | 214 | 55 | 266 | 0 |
CO125694 | 244 | 52 | 294 | 0 |
EE107085 | 233 | 63 | 294 | 0 |
DV135481 | 235 | 67 | 299 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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