Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.H00909.1 |
Family | CE8 |
Protein Properties | Length: 387 Molecular Weight: 42577.1 Isoelectric Point: 8.7601 |
Chromosome | Chromosome/Scaffold: 8 Start: 11293232 End: 11296321 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 90 | 378 | 0 |
TVSQDGTGDYRTVSEALNSIPAFNTRRVILVVKPGIYREKINVPRQMSFVTFLGDSTSPPTITGNDTASVTGRGGTPLKTFQSATVAVDADYFVAINVKF ENTAPHEVGSLGEQAVALRISGTKAAFYNCSFIGNQDTLYDHKGLHYFNNCFIQGSVDFIFGYGRSLYENCHLNSVTKKVASLTAQKRTNASLASGFSFK NSTITGSGLLYLGRAWGDYSRVIFSYTFMDRVVAPQGWSDWGDPKRDARVYYGEYKCSGPGANTTGRVPWATMLTDEEAQPFLGTYYIE |
Full Sequence |
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Protein Sequence Length: 387 Download |
MHTACTMSSS LSPTQMLLLL LSLCICKISL ASSSSSEDDA FRRWVSWNVE NYRRETSSNA 60 MLTAQAPGIP GKKVVDWKLW KAEMSKIRKT VSQDGTGDYR TVSEALNSIP AFNTRRVILV 120 VKPGIYREKI NVPRQMSFVT FLGDSTSPPT ITGNDTASVT GRGGTPLKTF QSATVAVDAD 180 YFVAINVKFE NTAPHEVGSL GEQAVALRIS GTKAAFYNCS FIGNQDTLYD HKGLHYFNNC 240 FIQGSVDFIF GYGRSLYENC HLNSVTKKVA SLTAQKRTNA SLASGFSFKN STITGSGLLY 300 LGRAWGDYSR VIFSYTFMDR VVAPQGWSDW GDPKRDARVY YGEYKCSGPG ANTTGRVPWA 360 TMLTDEEAQP FLGTYYIEGD TWLPSL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 3.0e-99 | 91 | 385 | 305 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 4.0e-104 | 84 | 383 | 300 | + putative pectinesterase | ||
PLN02671 | PLN02671 | 8.0e-106 | 91 | 383 | 295 | + pectinesterase | ||
PLN02665 | PLN02665 | 1.0e-126 | 44 | 383 | 345 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 4.0e-139 | 95 | 384 | 291 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79461.1 | 0 | 41 | 385 | 36 | 380 | hypothetical protein [Vitis vinifera] |
GenBank | EEC69509.1 | 0 | 40 | 383 | 69 | 408 | hypothetical protein OsI_38743 [Oryza sativa Indica Group] |
RefSeq | NP_001067039.1 | 0 | 40 | 383 | 68 | 407 | Os12g0563700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002320279.1 | 0 | 97 | 383 | 1 | 287 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002443368.1 | 0 | 28 | 383 | 66 | 425 | hypothetical protein SORBIDRAFT_08g018360 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 91 | 383 | 11 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 91 | 385 | 7 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 7e-18 | 99 | 386 | 18 | 341 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 7e-18 | 99 | 386 | 18 | 341 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 7e-18 | 99 | 386 | 18 | 341 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |