Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.H01088.1 |
Family | GH28 |
Protein Properties | Length: 421 Molecular Weight: 44058.5 Isoelectric Point: 5.3714 |
Chromosome | Chromosome/Scaffold: 8 Start: 13205043 End: 13207232 |
Description | polygalacturonase 4 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 75 | 407 | 0 |
WNAACHNSGPAKLVIPTGTFLSGPVVFQGPCEGSNPITVEVNGTIIASTDISEYSEDGWFSFELIDGLVLKGGIFDGQGQTAWPYNDCKHNKDCQHLPVS LKFNKVNNTVVDGVTSLNSKGFHFSITFSENFTGVNLNISAPDESPNTDGIHLSSSDRINISSSVIATGDDCLGIIQGATNVSVNEITCGPGHGISIGSL GKYPNEKDVIGVHVRNATLTNTTNGVRIKAFPGDRQLLASDIIFEDIVLNYVKNPIIIDQHYGSRKVTKPSSVKLSDVHFKNIRGTTVSEVAVLLQCSSS NPCEQVELSDIDLSFAGAASGSKNVTSLCENTK |
Full Sequence |
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Protein Sequence Length: 421 Download |
MGTSGGITAG RAVALGLALL ACLVTGGESR GPLYGEIGAA RRGLVETGAA VFDVTQYGAK 60 ADGKTDNSMA FVKAWNAACH NSGPAKLVIP TGTFLSGPVV FQGPCEGSNP ITVEVNGTII 120 ASTDISEYSE DGWFSFELID GLVLKGGIFD GQGQTAWPYN DCKHNKDCQH LPVSLKFNKV 180 NNTVVDGVTS LNSKGFHFSI TFSENFTGVN LNISAPDESP NTDGIHLSSS DRINISSSVI 240 ATGDDCLGII QGATNVSVNE ITCGPGHGIS IGSLGKYPNE KDVIGVHVRN ATLTNTTNGV 300 RIKAFPGDRQ LLASDIIFED IVLNYVKNPI IIDQHYGSRK VTKPSSVKLS DVHFKNIRGT 360 TVSEVAVLLQ CSSSNPCEQV ELSDIDLSFA GAASGSKNVT SLCENTKPTF IGTQNPPACL 420 * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 7.0e-77 | 47 | 420 | 378 | + polygalacturonase | ||
PLN02218 | PLN02218 | 7.0e-77 | 42 | 399 | 367 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-83 | 51 | 420 | 380 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-86 | 79 | 401 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-134 | 52 | 419 | 376 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69218.1 | 0 | 1 | 414 | 1 | 421 | hypothetical protein [Vitis vinifera] |
EMBL | CBI36886.1 | 0 | 1 | 419 | 1 | 414 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002268540.1 | 0 | 1 | 419 | 1 | 410 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272193.1 | 0 | 1 | 419 | 1 | 426 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301489.1 | 0 | 9 | 419 | 4 | 412 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-18 | 147 | 388 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 9e-18 | 149 | 401 | 84 | 335 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 9e-18 | 149 | 401 | 84 | 335 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 9e-18 | 149 | 401 | 84 | 335 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1nhc_F | 0.000000000000001 | 143 | 401 | 74 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |