Basic Information | |
---|---|
Species | Eucalyptus grandis |
Cazyme ID | Eucgr.H01308.1 |
Family | GH28 |
Protein Properties | Length: 247 Molecular Weight: 26734.2 Isoelectric Point: 5.4379 |
Chromosome | Chromosome/Scaffold: 8 Start: 15751655 End: 15752806 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 2 | 202 | 0 |
NSPQFHFRFDGCRNVLIESLSIKAPSQSPNTDGIHIENSNNVGIYNSMISNGDDCVSIGASTYDVDIRNITCGPSHGISIGSLGVRNSHACVSNITVTDS VIKHSDNGVRIKTWQGGSGAVSHVTFNNIHMDTVRNPIIIDQYYCLAKNCANQTSAVYVSDILYSNIKGTYDARSPPMHFGCSDAIPCTNLTLSDIELLP A |
Full Sequence |
---|
Protein Sequence Length: 247 Download |
MNSPQFHFRF DGCRNVLIES LSIKAPSQSP NTDGIHIENS NNVGIYNSMI SNGDDCVSIG 60 ASTYDVDIRN ITCGPSHGIS IGSLGVRNSH ACVSNITVTD SVIKHSDNGV RIKTWQGGSG 120 AVSHVTFNNI HMDTVRNPII IDQYYCLAKN CANQTSAVYV SDILYSNIKG TYDARSPPMH 180 FGCSDAIPCT NLTLSDIELL PAQGQFVLNP FCWNAYGIME TLTIPPAMCL VEGMPEKIIQ 240 TDVDHC* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 6.0e-53 | 1 | 230 | 236 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-60 | 2 | 199 | 198 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 1.0e-60 | 1 | 226 | 229 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 5.0e-68 | 2 | 199 | 198 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-79 | 1 | 227 | 228 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 2 | 246 | 240 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002276945.1 | 0 | 2 | 246 | 220 | 464 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002330008.1 | 0 | 2 | 236 | 173 | 407 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512560.1 | 0 | 2 | 246 | 226 | 470 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002515219.1 | 0 | 2 | 246 | 293 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-20 | 31 | 203 | 152 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-20 | 31 | 203 | 152 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-20 | 31 | 203 | 152 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-20 | 31 | 203 | 152 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-20 | 31 | 203 | 152 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
CU581996 | 230 | 1 | 230 | 0 |
GO990255 | 239 | 2 | 240 | 0 |
EC956137 | 239 | 9 | 247 | 0 |
CX663441 | 247 | 1 | 247 | 0 |
EV124391 | 213 | 2 | 213 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|