Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.H01886.1 |
Family | GH28 |
Protein Properties | Length: 381 Molecular Weight: 40145.6 Isoelectric Point: 7.9157 |
Chromosome | Chromosome/Scaffold: 8 Start: 24074218 End: 24076849 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 60 | 374 | 0 |
AACGSEKPAMISVPPGRFLVGGATFNGPCKNNAIRWHIQGVITAPTDYSVLGNVGTWLLFQYVDGMSISGGILDGQGAALWACKASDILFSNSRTLSEQL MSLNSQLFHMSSTDAKREAARSEGFRLRPNTDGVHVQLSSGVTIMSSKIGTGDDCVSVGAGTTNLWIENVMCGPGHGISIGSLGKDLEEAGVENVTVKNV MFGGTQNGLRIKSWGRPSTGFAKNILFQHALMSNVKNPIVIDQNYCPNKINCPGQFSGVKISDVTYQNIHGTSATEVAVKFDCSPKNPCTGIRLEDVKLT YKNDRRPAQASCVNA |
Full Sequence |
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Protein Sequence Length: 381 Download |
MSSHSTLGVA SLLFMAFHIG ITSSQAAIAA TAAEYDVVSL GAKPDGVTDS TRAFVGAWLA 60 ACGSEKPAMI SVPPGRFLVG GATFNGPCKN NAIRWHIQGV ITAPTDYSVL GNVGTWLLFQ 120 YVDGMSISGG ILDGQGAALW ACKASDILFS NSRTLSEQLM SLNSQLFHMS STDAKREAAR 180 SEGFRLRPNT DGVHVQLSSG VTIMSSKIGT GDDCVSVGAG TTNLWIENVM CGPGHGISIG 240 SLGKDLEEAG VENVTVKNVM FGGTQNGLRI KSWGRPSTGF AKNILFQHAL MSNVKNPIVI 300 DQNYCPNKIN CPGQFSGVKI SDVTYQNIHG TSATEVAVKF DCSPKNPCTG IRLEDVKLTY 360 KNDRRPAQAS CVNAGGLAFG L |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-76 | 37 | 374 | 358 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-78 | 37 | 358 | 346 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-83 | 62 | 374 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 4.0e-97 | 35 | 374 | 360 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-119 | 35 | 381 | 362 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC22689.1 | 0 | 3 | 380 | 8 | 390 | polygalacturonase [Pyrus communis] |
DDBJ | BAF42034.1 | 0 | 3 | 380 | 8 | 390 | polygalacturonase3 [Pyrus communis] |
EMBL | CAH18935.1 | 0 | 3 | 380 | 8 | 390 | polygalacturonase [Pyrus communis] |
RefSeq | XP_002529090.1 | 0 | 10 | 381 | 7 | 386 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529092.1 | 0 | 4 | 381 | 2 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-17 | 162 | 359 | 170 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 0.00000000000005 | 128 | 359 | 77 | 332 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 0.00000000000008 | 129 | 371 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000008 | 129 | 371 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000000008 | 129 | 371 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |