y
Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.H01889.1 |
Family | GH28 |
Protein Properties | Length: 380 Molecular Weight: 39758.1 Isoelectric Point: 7.9737 |
Chromosome | Chromosome/Scaffold: 8 Start: 24101697 End: 24104322 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 36 | 365 | 0 |
LAACSSKKPATISVPPGRFLVGGATFSGPCKNNAIRWRIQGVITAPADYNVLGNVGTWLLFQHVDGMSMSGGILDGQGAALWACKASGKNCPQWSHETIL FSNSRNIVVRKLTSLNSQLFHIVINGCQNVRLQGVKVFASGESPNTDGVHVQLSSGVTIMSSKIGTGDDCVSVGAGTTNLWIENVACGPGHGISIGSLGK DLEEAGVENVTVKNVVFGGTQNGLRIKSWGRPSTGFAKNILFQHAIMSNVKNPIVIDQNFCPNNINCPGQFSGVKISDVTYQDIHGTSATEVAVKFDCSA KNPCTGIRIEDVKITYRNDQQPAQASCVNA |
Full Sequence |
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Protein Sequence Length: 380 Download |
SQAAIAAATD EYDVVSLGAK PDGVTDSTRA FVAAWLAACS SKKPATISVP PGRFLVGGAT 60 FSGPCKNNAI RWRIQGVITA PADYNVLGNV GTWLLFQHVD GMSMSGGILD GQGAALWACK 120 ASGKNCPQWS HETILFSNSR NIVVRKLTSL NSQLFHIVIN GCQNVRLQGV KVFASGESPN 180 TDGVHVQLSS GVTIMSSKIG TGDDCVSVGA GTTNLWIENV ACGPGHGISI GSLGKDLEEA 240 GVENVTVKNV VFGGTQNGLR IKSWGRPSTG FAKNILFQHA IMSNVKNPIV IDQNFCPNNI 300 NCPGQFSGVK ISDVTYQDIH GTSATEVAVK FDCSAKNPCT GIRIEDVKIT YRNDQQPAQA 360 SCVNAGGLAF GLVQPSSCL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-86 | 14 | 375 | 369 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-91 | 14 | 379 | 372 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-93 | 39 | 365 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 9.0e-106 | 7 | 378 | 380 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 4.0e-142 | 6 | 379 | 374 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC22689.1 | 0 | 5 | 379 | 27 | 398 | polygalacturonase [Pyrus communis] |
DDBJ | BAF42034.1 | 0 | 5 | 379 | 27 | 398 | polygalacturonase3 [Pyrus communis] |
EMBL | CAH18935.1 | 0 | 5 | 379 | 27 | 398 | polygalacturonase [Pyrus communis] |
RefSeq | XP_002309718.1 | 0 | 7 | 379 | 23 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529090.1 | 0 | 7 | 379 | 24 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-22 | 107 | 350 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 9e-16 | 105 | 350 | 77 | 332 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1czf_B | 0.00000000000007 | 97 | 362 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 0.00000000000007 | 97 | 362 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1rmg_A | 0.0000000000001 | 1 | 349 | 10 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JZ191937 | 302 | 78 | 379 | 0 |
DY281549 | 316 | 12 | 326 | 0 |
JZ194028 | 291 | 72 | 362 | 0 |
JZ192826 | 287 | 76 | 362 | 0 |
JZ193571 | 293 | 5 | 297 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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