y
Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.H01890.1 |
Family | GH28 |
Protein Properties | Length: 406 Molecular Weight: 42151.9 Isoelectric Point: 7.8082 |
Chromosome | Chromosome/Scaffold: 8 Start: 24140918 End: 24143424 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 64 | 391 | 0 |
AACGSEMPATIRVPAGRFLVGGATFNGPCKNNAIRWQIEGVITAPADYNVLGNVGTWLLFQHVDGMSISGGVLDGQGAALWACKASGKSCPGGATTIVFS DSRNIAISKLTSLNSQLFHIVINGCQNVRLQGMKVFASGDSPNTDGVHVQLSSGVTIMNSKIGTGDDCVSVGAGTTNLWIENVACGPGHGISIGSLGKDL EEAGVENVTVKNAVFRGTQNGLRIKSWGRPSTGFAKNVLFQHAVMSNVNNPIVIDQNYCPNNINCPGQFSGVKISDVTYQDIHGTSATEVAVKFDCSLKN PCTGIRLEDVKLAYKNNQQPAQASCVNA |
Full Sequence |
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Protein Sequence Length: 406 Download |
MAFSMSSHST LGVSSLLFTV FHIAMISSQA AIAVSAAKYN VVSLGAKPDG VTDSTQAFVG 60 TWLAACGSEM PATIRVPAGR FLVGGATFNG PCKNNAIRWQ IEGVITAPAD YNVLGNVGTW 120 LLFQHVDGMS ISGGVLDGQG AALWACKASG KSCPGGATTI VFSDSRNIAI SKLTSLNSQL 180 FHIVINGCQN VRLQGMKVFA SGDSPNTDGV HVQLSSGVTI MNSKIGTGDD CVSVGAGTTN 240 LWIENVACGP GHGISIGSLG KDLEEAGVEN VTVKNAVFRG TQNGLRIKSW GRPSTGFAKN 300 VLFQHAVMSN VNNPIVIDQN YCPNNINCPG QFSGVKISDV TYQDIHGTSA TEVAVKFDCS 360 LKNPCTGIRL EDVKLAYKNN QQPAQASCVN AGGLAFGLVQ PSSCL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 5.0e-88 | 40 | 401 | 369 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-93 | 66 | 391 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 8.0e-94 | 41 | 405 | 372 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-102 | 39 | 404 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 7.0e-145 | 39 | 405 | 367 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC22689.1 | 0 | 20 | 405 | 14 | 398 | polygalacturonase [Pyrus communis] |
DDBJ | BAF42034.1 | 0 | 20 | 405 | 14 | 398 | polygalacturonase3 [Pyrus communis] |
EMBL | CAH18935.1 | 0 | 20 | 405 | 14 | 398 | polygalacturonase [Pyrus communis] |
RefSeq | XP_002529090.1 | 0 | 14 | 405 | 7 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529092.1 | 0 | 8 | 405 | 2 | 394 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 9e-21 | 134 | 375 | 117 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 4e-16 | 132 | 371 | 77 | 327 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1rmg_A | 0.000000000000004 | 40 | 375 | 22 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 0.00000000000001 | 133 | 388 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000001 | 133 | 388 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |