Basic Information | |
---|---|
Species | Eucalyptus grandis |
Cazyme ID | Eucgr.H02448.1 |
Family | PL1 |
Protein Properties | Length: 407 Molecular Weight: 44417.1 Isoelectric Point: 7.2966 |
Chromosome | Chromosome/Scaffold: 8 Start: 33407987 End: 33409913 |
Description | Pectate lyase family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 119 | 325 | 0 |
VIQNEPLWIVFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGLNIHDCKQGGNAYVRDSPDHYGWRTVSDGDGVSIFGGSHIWV DHCSLSNCRDGLIDAIRGATAITLSNNYLTHHNKVMLLGHSDSYTQDKNMQITIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAVGGSAAPTINS QGNRFVA |
Full Sequence |
---|
Protein Sequence Length: 407 Download |
MAIHPCLPLL LMHIVLAPHA FASPSPVQDP ELVVQEVNES IFNASRRNLG FLSCGTGNPI 60 DDCWRCDPNW EKNRQRLADC AIGFGKHAIG GRDGKIYVVT DPGDDNPVNP KLGTLRHAVI 120 QNEPLWIVFA RDMVIRLKEE LIMNSFKTID GRGASVHIAG GPCITIQFVT NIIIHGLNIH 180 DCKQGGNAYV RDSPDHYGWR TVSDGDGVSI FGGSHIWVDH CSLSNCRDGL IDAIRGATAI 240 TLSNNYLTHH NKVMLLGHSD SYTQDKNMQI TIAFNHFGEG LVQRMPRCRH GYFHVVNNDY 300 THWEMYAVGG SAAPTINSQG NRFVAPDDAF NKEVTKHEDA PQSEWKHWNW RSEGDLMVNG 360 AFFTASGAGA SSSYAKASSL GARPSSVVGS ITASAGTLGC KKGKRC* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-28 | 145 | 323 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-71 | 138 | 323 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-80 | 132 | 327 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ADB90476.1 | 0 | 28 | 406 | 34 | 411 | pectate lyase [Gossypium raimondii] |
DDBJ | BAB59066.1 | 0 | 23 | 406 | 27 | 409 | pectate lyase [Salix gilgiana] |
RefSeq | XP_002285340.1 | 0 | 23 | 406 | 21 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002322215.1 | 0 | 20 | 406 | 18 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515037.1 | 0 | 16 | 406 | 15 | 404 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 58 | 398 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 58 | 398 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 5e-17 | 127 | 324 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 0.000000000000002 | 148 | 395 | 151 | 404 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 2bsp_A | 0.000000000000004 | 148 | 395 | 151 | 404 | A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant |