Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.H02555.1 |
Family | GH28 |
Protein Properties | Length: 1102 Molecular Weight: 120344 Isoelectric Point: 5.1257 |
Chromosome | Chromosome/Scaffold: 8 Start: 35468880 End: 35474439 |
Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 727 | 1055 | 0 |
ACATPKAVFLVPPGRRYLVNATRFNGPCSDKLVIQIDGTIVAPNEPSNWDPKSARIWLDFYKLNGVLFQGNGIIDGSGSKWWAASCKKNKTNPCRGAPTA LTIDSSSSIKVKGLTIQNSQQMHFVISRSDSVRVSGVLVSAPGDSPNTDGIHITESTNVVLQDCKIGTGDDCVSIVNASSNIKMKRIFCGPGHGISIGSL GKDNSTGIVTKVVLDTAFLRETTNGLRIKTWQGGSGYVRAVRFDNVRMENVANPIIIDQFYCDSPTTCQIQTSAVKISQIMYRNITGTTKSEQAMKFACS DTVPCSDIVLSNINLESEDVTVETYCHSA |
Full Sequence |
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Protein Sequence Length: 1102 Download |
MPSRSLLRLV RTITTLTPKR VPLHAPAPQS PPRDYVYFMN RALDDLIKSG DVGSAVNMFD 60 EMPARNGVTY NLLISGQGRH GFAEAALSLY STMVSQGVEE SAQTFTTVLS ICTNGGFYRE 120 GTQVHCRVVL LGFSSNLYIG SALAGLYLHM GLADVALVII RELPERSLAT WNLILRGFCD 180 VGRPDLLFGL FGEMKVDGFE PNGLSFCYMI NGCATDKLVD EGKQLHCQVI KAGWVESQIF 240 VANSLVDFYS SCWCLNDAKQ SFISLPVEDV ISWNSIVSVY AGHGLLLDAL ELFSRMQFWG 300 QRPSVRSIVG FLNLSSEMRN IDLGKQIHCL VKKLGFDQGS FYAQSALIDM YGKCGEIEYS 360 ISAFESLTEK CMGCCNSLMT SLLQCGMVED VVELFGFMVG EGVGFDEVSL STMLKAISMS 420 ACGSLTSTDL VCGCAIKSGY ESDTAVSCSL IDAYSRWGCI DLSHEVFEKM VSPNVTCFTS 480 IISAYARNGM GREGLEMLDA MTKRGLKPDE VTFLAALLGC SHSGLVEEGR FLFYNMTFHH 540 GINPNRKHYS CMIDLLGRAG LLSEAEELLK QAPEEADCAM WSSLLRSCRV HGNEMVGRRA 600 AEKLTEFELG DPAVTLQVSN FYCEIGEYQN SMQIREIAMG KKMTRQIGHS LIEAKTPANK 660 IEYGKFSILE EFESLHVEEE NEVEDPDIPS WAGQRDGKVL VNVDSFGAAG DGISDDTQAF 720 LKAWAMACAT PKAVFLVPPG RRYLVNATRF NGPCSDKLVI QIDGTIVAPN EPSNWDPKSA 780 RIWLDFYKLN GVLFQGNGII DGSGSKWWAA SCKKNKTNPC RGAPTALTID SSSSIKVKGL 840 TIQNSQQMHF VISRSDSVRV SGVLVSAPGD SPNTDGIHIT ESTNVVLQDC KIGTGDDCVS 900 IVNASSNIKM KRIFCGPGHG ISIGSLGKDN STGIVTKVVL DTAFLRETTN GLRIKTWQGG 960 SGYVRAVRFD NVRMENVANP IIIDQFYCDS PTTCQIQTSA VKISQIMYRN ITGTTKSEQA 1020 MKFACSDTVP CSDIVLSNIN LESEDVTVET YCHSAEGFGY GVVHPSADCL SSQDKDLISI 1080 GWAQEAATVR PIDEHIVHTE L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03077 | PLN03077 | 7.0e-85 | 24 | 655 | 637 | + Protein ECB2; Provisional | ||
PLN03003 | PLN03003 | 5.0e-92 | 701 | 1043 | 347 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-97 | 728 | 1052 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-117 | 701 | 1065 | 368 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-142 | 695 | 1072 | 380 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF79584.1 | 0 | 1 | 1088 | 1 | 1156 | AC007945_4 F28C11.9 [Arabidopsis thaliana] |
EMBL | CAN65318.1 | 0 | 1 | 1101 | 1 | 1052 | hypothetical protein [Vitis vinifera] |
EMBL | CBI28554.1 | 0 | 29 | 1101 | 38 | 1111 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002299032.1 | 0 | 658 | 1101 | 20 | 469 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328586.1 | 0 | 3 | 657 | 8 | 680 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-21 | 796 | 987 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 4e-19 | 799 | 1041 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-19 | 799 | 1041 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-19 | 799 | 1041 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-19 | 799 | 1041 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FE686036 | 253 | 687 | 939 | 0 |
FP038137 | 219 | 775 | 993 | 0 |
EV550328 | 224 | 737 | 960 | 0 |
CA929934 | 214 | 752 | 965 | 0 |
EV271942 | 219 | 714 | 932 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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