Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.H02860.1 |
Family | PL1 |
Protein Properties | Length: 445 Molecular Weight: 48660 Isoelectric Point: 8.28 |
Chromosome | Chromosome/Scaffold: 8 Start: 41416481 End: 41422550 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 159 | 363 | 0 |
QDRPLWIVFKRDMVIVLKQELLMNSFKTIDGRGANVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMIRSSPTHYGWRTMADGDAVSIFGASHIWVDH NSLSKCADGLVDAIMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQG NRYAA |
Full Sequence |
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Protein Sequence Length: 445 Download |
MEAAKSLVYV SAAVLLMLFI GATIARMSPL GNVETEKLSS KNSSMAASLL AEEEVGDHSS 60 RHAVEDPEEI ASMVEMSIRN STERRKLGYF SCGTGNPIDD CWRCDPNWHK NRKRLADCGI 120 GFGRNAIGGR DGRFYVVTDP SDNDPVNPRP GTLRHAVIQD RPLWIVFKRD MVIVLKQELL 180 MNSFKTIDGR GANVHIANGA CITIQFVTNI IIHGLHIHDC KPTGNAMIRS SPTHYGWRTM 240 ADGDAVSIFG ASHIWVDHNS LSKCADGLVD AIMGSTAITI SNNHMTHHNE VMLLGHSDSY 300 TRDKQMQVTI AYNHFGEGLI QRMPRCRHGY FHVVNNDYTH WEMYAIGGSA SPTINSQGNR 360 YAAPSNPFAK EVTKRVDTAT SQWKSWNWRS EGDLLLNGAY FTPSGAGASA SYARASSLGA 420 KSSSMVGSIT SGAGPLPCRR GRQC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 5.0e-27 | 183 | 376 | 206 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 6.0e-71 | 176 | 361 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-81 | 170 | 365 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ADD62392.1 | 0 | 32 | 444 | 35 | 445 | pectase lyase [Prunus persica] |
DDBJ | BAF43573.1 | 0 | 18 | 444 | 1 | 425 | pectate lyase [Prunus persica] |
EMBL | CBI33346.1 | 0 | 24 | 444 | 20 | 430 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002297822.1 | 0 | 1 | 444 | 1 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002304700.1 | 0 | 32 | 444 | 41 | 452 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 96 | 434 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 96 | 434 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.00000000000001 | 165 | 361 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.00000000000002 | 186 | 434 | 90 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.00000000000002 | 186 | 434 | 90 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |