Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.H03964.1 |
Family | GH28 |
Protein Properties | Length: 419 Molecular Weight: 45016.7 Isoelectric Point: 5.5752 |
Chromosome | Chromosome/Scaffold: 8 Start: 57671294 End: 57673197 |
Description | polygalacturonase 4 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 69 | 394 | 0 |
WEEACAHRSNSTLYVPNSTFLVSPISFNGPCRYLYSPRVEVRGTLKAPMSPSEFPSNDWIVFRDLHGLVLTGETGRALFDGQGSETWKDPSCHKKSRCDK LITSLRLSNVSNATIYHIDLLNSKSFHMSIYKSSNIRLHSISIISPEDSPNTDGIHVSHSANISITSSTIGVGDDCVSIGPGNTNISVSYVDCGPGHGIS VGSLGKGQNEERVDLIRVSNCTINGTQNGVRVKTWPGAPPSEASNMIFENIVMTNVTNPIIIDQEYCPSSQCDIEKASLVKLSNMLFKNITGTYNSNKAV ALLCSPSVPCENVFLVGVHLKWTTEQ |
Full Sequence |
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Protein Sequence Length: 419 Download |
MATCFPSLDD AYAPVPSPLA DDPPGTAPGQ PGGDPPTTQE RLVGVFDVMD YGAVADGTTD 60 SRLAFLSAWE EACAHRSNST LYVPNSTFLV SPISFNGPCR YLYSPRVEVR GTLKAPMSPS 120 EFPSNDWIVF RDLHGLVLTG ETGRALFDGQ GSETWKDPSC HKKSRCDKLI TSLRLSNVSN 180 ATIYHIDLLN SKSFHMSIYK SSNIRLHSIS IISPEDSPNT DGIHVSHSAN ISITSSTIGV 240 GDDCVSIGPG NTNISVSYVD CGPGHGISVG SLGKGQNEER VDLIRVSNCT INGTQNGVRV 300 KTWPGAPPSE ASNMIFENIV MTNVTNPIII DQEYCPSSQC DIEKASLVKL SNMLFKNITG 360 TYNSNKAVAL LCSPSVPCEN VFLVGVHLKW TTEQEDRRAG RVSLKGLIQG LDIINSSF* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 2.0e-77 | 41 | 388 | 353 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 6.0e-84 | 45 | 390 | 348 | + polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-84 | 48 | 389 | 346 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 4.0e-96 | 73 | 388 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 4.0e-121 | 46 | 395 | 352 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ63000.1 | 0 | 37 | 391 | 53 | 405 | oil palm polygalacturonase allergen PEST643 [Elaeis guineensis] |
EMBL | CAN69218.1 | 0 | 45 | 395 | 55 | 402 | hypothetical protein [Vitis vinifera] |
EMBL | CAN69218.1 | 0 | 45 | 418 | 489 | 863 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22963.1 | 0 | 45 | 418 | 31 | 405 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270999.1 | 0 | 45 | 418 | 70 | 444 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-21 | 86 | 359 | 50 | 334 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-17 | 145 | 388 | 78 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-17 | 145 | 388 | 78 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-17 | 145 | 388 | 78 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-17 | 145 | 388 | 78 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DR930531 | 294 | 64 | 352 | 0 |
DR932296 | 259 | 104 | 358 | 0 |
GR452825 | 280 | 45 | 324 | 0 |
GR458020 | 271 | 64 | 334 | 0 |
GR455550 | 271 | 64 | 334 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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