| Basic Information | |
|---|---|
| Species | Eucalyptus grandis |
| Cazyme ID | Eucgr.I00199.1 |
| Family | GH28 |
| Protein Properties | Length: 489 Molecular Weight: 52732.2 Isoelectric Point: 7.3018 |
| Chromosome | Chromosome/Scaffold: 9 Start: 4242111 End: 4247269 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 120 | 452 | 0 |
| RGGSQLNVPRGTWVTGSFNLTSNFTLFLEEGARILGSQDPNDWPIIEPLPSYGRGRERLGGRHISLIHGNGLTDVVITGNNGTIDGQGKMWWELWWNRTL EHTRGHLVELMNSHNVLISNLTFRNSPFWTIHPVYCSNVVIKDMTILAPLNAPNTDGIDPDSCSKVCIEDCYIESGDDLVAVKSGWDQYGIATAHPSSDI IVRRVSGTTPTCSGVGIGSEMSGGILNVIIEDLHVWDSAAGIRIKTDIGRGGYIANISISNVIMERVKIPIRFSRGSNDHPDEGWDPKAIPRVKGVFISN VVSVNSTKGPVLDGMKVSPFEQICMKNISLYGL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 489 Download |
| MEPEKPTFGF GSAAAHLARP AWTPFLLLLL SFLAVLSVQI ATKPFSPPPP PAAAATVGSP 60 PAARVAPPPG SCAGFFPGGS PPERKVVMSM RDFGGVGDGA RPETETFRRA VRHLRRFGGR 120 GGSQLNVPRG TWVTGSFNLT SNFTLFLEEG ARILGSQDPN DWPIIEPLPS YGRGRERLGG 180 RHISLIHGNG LTDVVITGNN GTIDGQGKMW WELWWNRTLE HTRGHLVELM NSHNVLISNL 240 TFRNSPFWTI HPVYCSNVVI KDMTILAPLN APNTDGIDPD SCSKVCIEDC YIESGDDLVA 300 VKSGWDQYGI ATAHPSSDII VRRVSGTTPT CSGVGIGSEM SGGILNVIIE DLHVWDSAAG 360 IRIKTDIGRG GYIANISISN VIMERVKIPI RFSRGSNDHP DEGWDPKAIP RVKGVFISNV 420 VSVNSTKGPV LDGMKVSPFE QICMKNISLY GLPPPVKWHC EFLSGFADDV SPVPCPELRN 480 NSSTLSCP* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN03010 | PLN03010 | 3.0e-18 | 186 | 390 | 213 | + polygalacturonase |
| PLN02218 | PLN02218 | 2.0e-22 | 88 | 451 | 382 | + polygalacturonase ADPG |
| PLN03003 | PLN03003 | 5.0e-23 | 88 | 449 | 374 | + Probable polygalacturonase At3g15720 |
| pfam00295 | Glyco_hydro_28 | 9.0e-31 | 186 | 461 | 285 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| COG5434 | PGU1 | 5.0e-59 | 87 | 453 | 392 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN76963.1 | 0 | 71 | 485 | 51 | 463 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI37530.1 | 0 | 71 | 487 | 62 | 476 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002274138.1 | 0 | 71 | 487 | 62 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002310517.1 | 0 | 71 | 487 | 20 | 434 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526639.1 | 0 | 66 | 487 | 49 | 477 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 3e-40 | 82 | 451 | 24 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 3e-40 | 82 | 451 | 24 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 3e-40 | 82 | 451 | 24 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 3e-40 | 82 | 451 | 24 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 4e-19 | 132 | 449 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
