Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.I00574.1 |
Family | PL4 |
Protein Properties | Length: 698 Molecular Weight: 80106.2 Isoelectric Point: 7.9263 |
Chromosome | Chromosome/Scaffold: 9 Start: 11834298 End: 11839851 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 76 | 675 | 0 |
PGQVLIDNGLVQVTLSIPDGDVIGIRYNGIDNLLEGLNEENNRGYWDVVWNWPGEPIKYDRIQGTIYRVVTQNEDQIEMSFVRKWSPSANHTVVPLHIDK RYIVRRGTSGFYAYGIFERPEGLPDIEMDQVRIVYRLQNKKFHFMALSDDRQRVMPMPEDRITGQPLAYPEAVLLTDPINPELRGEVDDKYQYSCENQYN NVHGWICGDPPVGFWLITPSNEFRTAGPVKQDLTSHVGPITLSMFVSTHYAGKEVGMKFQGGRPWKKVFGPVLIYLNSVPPEEDTSTLWQNAKEKMYMES KTWPYGFAESEDFPSSKERGMVVGQLLVRDRYVSKRYLWGEFAYVGLASPGQAGSWQRENKGYQFWHRADRKGNFIINNIRAGEYNLYGWVPGTIGDYKY KGIVTITPGSVINLGMLIYEPPRHGPTLWEIGVPDRTASEFYVPQPYPTLMNNLYANNRQYRFRQYGLWERYADLYPRSDLVFHVGVDDYRKDWFFAQVT RNLYNYTFAATTWQIVFELETVKKTAGYVLQLALASVTESDLQVRFNDPTMEPPLFATGRIGQDNAIARHGIHGLYWLYSIPVPSSQLRRGSNTIFLTQA |
Full Sequence |
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Protein Sequence Length: 698 Download |
MLCRAWLGYF LVAGEKMSYW RPQWSPLGPG GRRQGAAMVH LLLLWCCIVR SASTHHFPGG 60 RKPKPPLGVQ LSLHDPGQVL IDNGLVQVTL SIPDGDVIGI RYNGIDNLLE GLNEENNRGY 120 WDVVWNWPGE PIKYDRIQGT IYRVVTQNED QIEMSFVRKW SPSANHTVVP LHIDKRYIVR 180 RGTSGFYAYG IFERPEGLPD IEMDQVRIVY RLQNKKFHFM ALSDDRQRVM PMPEDRITGQ 240 PLAYPEAVLL TDPINPELRG EVDDKYQYSC ENQYNNVHGW ICGDPPVGFW LITPSNEFRT 300 AGPVKQDLTS HVGPITLSMF VSTHYAGKEV GMKFQGGRPW KKVFGPVLIY LNSVPPEEDT 360 STLWQNAKEK MYMESKTWPY GFAESEDFPS SKERGMVVGQ LLVRDRYVSK RYLWGEFAYV 420 GLASPGQAGS WQRENKGYQF WHRADRKGNF IINNIRAGEY NLYGWVPGTI GDYKYKGIVT 480 ITPGSVINLG MLIYEPPRHG PTLWEIGVPD RTASEFYVPQ PYPTLMNNLY ANNRQYRFRQ 540 YGLWERYADL YPRSDLVFHV GVDDYRKDWF FAQVTRNLYN YTFAATTWQI VFELETVKKT 600 AGYVLQLALA SVTESDLQVR FNDPTMEPPL FATGRIGQDN AIARHGIHGL YWLYSIPVPS 660 SQLRRGSNTI FLTQAWAINP YQGVMYDYIR LEGPPEL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 1.0e-28 | 393 | 490 | 98 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 8.0e-46 | 504 | 692 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 1.0e-66 | 71 | 353 | 290 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-72 | 74 | 262 | 191 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_179847.1 | 0 | 65 | 694 | 48 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 0 | 33 | 694 | 7 | 671 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 79 | 696 | 1 | 619 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 27 | 696 | 1 | 669 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 79 | 696 | 2 | 620 | lyase, putative [Ricinus communis] |