Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.I01777.1 |
Family | GH28 |
Protein Properties | Length: 556 Molecular Weight: 59100.7 Isoelectric Point: 7.6672 |
Chromosome | Chromosome/Scaffold: 9 Start: 27766131 End: 27769917 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 172 | 513 | 0 |
CPVAASTLVVPSGSVFMVKPISFSGPNCKPGIVFQLDGKIIAPTSSQAWGSGLLQWIEFTKLTTIKIQGKGIIDGQGSVWWNDSPTVNPTDELDSISSTA QSPTNSSNDMISTNLSGMPSTKPTALRFYGSTDVTVNGITIQNSPQAHLKFDSCTDVQVFGVTITSPGNSPNTDGIHLQNSQNMLIYSTNIACGDDCVSI QTGCSNVYIHNVNCGPGHGISIGGLGKDNTKACVSNITVRDTTITGTLTGVRIKTWQGGSGSAQDIMFSNIQVSEVQTPIVIDQFYCDKGKCQNETAAVA VSGINYMNIKGTYTVQPVHFACSDSLPCIGVSLTTIQLKPVQ |
Full Sequence |
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Protein Sequence Length: 556 Download |
MPRLTSKKLD GSTTGSDAGN LDTSNTATLS LIHSFKRLPP SLPPSVSLAG PKRMTKINLK 60 NDASLLLIAI FILSASLGTC YGREGKRWRH SEAHPLKKGE GHRDGHQHHH QHHRHLSPKV 120 MGDGYTVPHE TMTSLAGSSG STTTFNVLDY GAKGDGHADD TKAFEAAWAA ACPVAASTLV 180 VPSGSVFMVK PISFSGPNCK PGIVFQLDGK IIAPTSSQAW GSGLLQWIEF TKLTTIKIQG 240 KGIIDGQGSV WWNDSPTVNP TDELDSISST AQSPTNSSND MISTNLSGMP STKPTALRFY 300 GSTDVTVNGI TIQNSPQAHL KFDSCTDVQV FGVTITSPGN SPNTDGIHLQ NSQNMLIYST 360 NIACGDDCVS IQTGCSNVYI HNVNCGPGHG ISIGGLGKDN TKACVSNITV RDTTITGTLT 420 GVRIKTWQGG SGSAQDIMFS NIQVSEVQTP IVIDQFYCDK GKCQNETAAV AVSGINYMNI 480 KGTYTVQPVH FACSDSLPCI GVSLTTIQLK PVQGSHWYDP FCWETYGELK TATEPPISCL 540 QKGKPSKLPS QLVSC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-49 | 179 | 510 | 338 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 1.0e-52 | 145 | 514 | 375 | + polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-62 | 146 | 510 | 370 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-63 | 177 | 509 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-73 | 145 | 554 | 416 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD46483.1 | 0 | 138 | 555 | 39 | 443 | polygalacturonase PG1 [Glycine max] |
GenBank | ACU24545.1 | 0 | 138 | 555 | 39 | 443 | unknown [Glycine max] |
DDBJ | BAH56488.1 | 0 | 54 | 545 | 2 | 495 | polygalacturonase 1 [Prunus persica] |
RefSeq | XP_002311773.1 | 0 | 54 | 546 | 4 | 506 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521450.1 | 0 | 74 | 547 | 22 | 460 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-21 | 221 | 460 | 96 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 2e-19 | 136 | 515 | 12 | 344 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 2e-17 | 223 | 495 | 54 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-17 | 223 | 495 | 54 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-17 | 223 | 495 | 54 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |