Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.J00557.1 |
Family | GH28 |
Protein Properties | Length: 411 Molecular Weight: 44374.7 Isoelectric Point: 7.3032 |
Chromosome | Chromosome/Scaffold: 10 Start: 6143002 End: 6145978 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 66 | 398 | 0 |
EAACSAQRAVLVVPQNKTYGLTPITFSGPCGSDLTVKIYGTIEASSDQSAYEKDPTLWLKFENLTKLSVAGGGYINGNGETWWQKSCKRKPKPPCKHAPT ALTFQECKYLRVADLTITNAQQMHLVFKKCVNVSAVNLQITAPKESPNTDGIHVTDTQNITIDHCAIGTGDDCISIVSGSSNVQATDIACGPGHGISIGS LGAHMSADYVSNVVINNSRLSGTTNGVRIKTWQGGSGYASNIRFENLAMDNVTNPIIIDQNYCDQEKPCPPQAAAVQVRNVTYTNIRGTSASEEAIKFDC SRNHPCEDIFLQDINLRSESSVKSTEASCLYVR |
Full Sequence |
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Protein Sequence Length: 411 Download |
MARPSSVRTA SRDRISYNDS DFWRQLIRKQ SGAASSSTSL KMVNVNDYGA KGDGSDDTEA 60 FTKAWEAACS AQRAVLVVPQ NKTYGLTPIT FSGPCGSDLT VKIYGTIEAS SDQSAYEKDP 120 TLWLKFENLT KLSVAGGGYI NGNGETWWQK SCKRKPKPPC KHAPTALTFQ ECKYLRVADL 180 TITNAQQMHL VFKKCVNVSA VNLQITAPKE SPNTDGIHVT DTQNITIDHC AIGTGDDCIS 240 IVSGSSNVQA TDIACGPGHG ISIGSLGAHM SADYVSNVVI NNSRLSGTTN GVRIKTWQGG 300 SGYASNIRFE NLAMDNVTNP IIIDQNYCDQ EKPCPPQAAA VQVRNVTYTN IRGTSASEEA 360 IKFDCSRNHP CEDIFLQDIN LRSESSVKST EASCLYVRPT QTGIVSPRCD * 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-94 | 38 | 402 | 372 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 8.0e-95 | 32 | 408 | 382 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 5.0e-108 | 69 | 397 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-132 | 43 | 410 | 372 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 8.0e-138 | 25 | 407 | 386 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN64004.1 | 0 | 23 | 409 | 50 | 441 | hypothetical protein [Vitis vinifera] |
EMBL | CBI29907.1 | 0 | 23 | 409 | 50 | 441 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002282759.1 | 0 | 23 | 409 | 50 | 441 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282772.1 | 0 | 23 | 409 | 50 | 441 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002313308.1 | 0 | 38 | 409 | 4 | 375 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 9e-29 | 51 | 386 | 19 | 366 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 1e-20 | 33 | 385 | 11 | 342 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 7e-20 | 118 | 381 | 59 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 7e-20 | 118 | 381 | 59 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 7e-20 | 118 | 381 | 59 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EE093402 | 256 | 116 | 371 | 0 |
EE091344 | 243 | 140 | 382 | 0 |
CO902992 | 248 | 163 | 409 | 0 |
BU888780 | 232 | 180 | 411 | 0 |
EH767961 | 247 | 163 | 409 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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