Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.J01077.1 |
Family | GH28 |
Protein Properties | Length: 409 Molecular Weight: 44223.9 Isoelectric Point: 8.7677 |
Chromosome | Chromosome/Scaffold: 10 Start: 11769543 End: 11773852 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 74 | 393 | 0 |
VRSGRYLLRPVRFRGPCKSRHVSVMLGGATLVAPPDYRVLGGSSSWLNFDGVSNTSVHGGVLDAKGPSLWACKDSGRDCPDGATTLSFTNSNNIRIKDLT SMDSQMFHISINRCRNVRVQGVRVKADGNSPNTDGIHVQLSTNVLILHSDIATGDDCISIGPGTQNLRIQRIRCGPGHGISIGSLARSEKEPGVQNIIVR NTTFQGTQNGLRIKSWARPSNGFVRGVHFIDARMINAQNPIIIDQNYCPYGSRTCPNQESSVKISDVLYRDIQGTSASPIAVRFDCSTKNPCTGIRMRNV YLTCLDDEVTRSSCTNANGE |
Full Sequence |
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Protein Sequence Length: 409 Download |
MANLPDHLLW TLLFVLLLLL SRTSSSRTSS STSTLFDVLD FGADPTGAAD STQAFRDAWT 60 SACGRGDFFA TVAVRSGRYL LRPVRFRGPC KSRHVSVMLG GATLVAPPDY RVLGGSSSWL 120 NFDGVSNTSV HGGVLDAKGP SLWACKDSGR DCPDGATTLS FTNSNNIRIK DLTSMDSQMF 180 HISINRCRNV RVQGVRVKAD GNSPNTDGIH VQLSTNVLIL HSDIATGDDC ISIGPGTQNL 240 RIQRIRCGPG HGISIGSLAR SEKEPGVQNI IVRNTTFQGT QNGLRIKSWA RPSNGFVRGV 300 HFIDARMINA QNPIIIDQNY CPYGSRTCPN QESSVKISDV LYRDIQGTSA SPIAVRFDCS 360 TKNPCTGIRM RNVYLTCLDD EVTRSSCTNA NGEALGTVRP RSCLFENS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 6.0e-82 | 70 | 390 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-89 | 36 | 404 | 376 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-89 | 38 | 401 | 370 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 8.0e-95 | 36 | 403 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 1.0e-127 | 36 | 404 | 369 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI23356.1 | 0 | 35 | 404 | 21 | 390 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002262690.1 | 0 | 29 | 404 | 25 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315106.1 | 0 | 6 | 404 | 2 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524365.1 | 0 | 9 | 404 | 1 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529089.1 | 0 | 11 | 404 | 9 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-20 | 159 | 376 | 154 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.000000000001 | 120 | 376 | 70 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000001 | 120 | 376 | 70 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000001 | 120 | 376 | 70 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.000000000001 | 120 | 376 | 70 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |