| Basic Information | |
|---|---|
| Species | Eucalyptus grandis |
| Cazyme ID | Eucgr.J01160.1 |
| Family | PL1 |
| Protein Properties | Length: 332 Molecular Weight: 37240.1 Isoelectric Point: 7.6938 |
| Chromosome | Chromosome/Scaffold: 10 Start: 12719451 End: 12722684 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 64 | 240 | 0 |
| EVSGTICLSSYLSVSSHKTIDGRGQRIKLTGKGLRLKDCENIIVCNLEFEGGRGHDVDGIQIKPNSRNIWIDRCSLRNYDDGLIDITRQSTDITVSRCHF SNHDKTMLIGADPSHTMDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYTRNWGIYAVCASVESQIFSQCNIYEA | |||
| Full Sequence |
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| Protein Sequence Length: 332 Download |
| MTTLPYSDVD FSLRAMAGRA EGFGRLAVGG LHGPLYHVTS LSDDGPGSLR EGCRRKEPLW 60 IVFEVSGTIC LSSYLSVSSH KTIDGRGQRI KLTGKGLRLK DCENIIVCNL EFEGGRGHDV 120 DGIQIKPNSR NIWIDRCSLR NYDDGLIDIT RQSTDITVSR CHFSNHDKTM LIGADPSHTM 180 DRCIRVTIHH CFFDGTRQRH PRVRFGKVHL YNNYTRNWGI YAVCASVESQ IFSQCNIYEA 240 GQKKKTFEYY TEKAPDREQA VSGLIRSEGD SFLNGAQAWS QAGFGECGVF HPSEFYPSWT 300 IEMPSDSLKY VLQICTGWQS IPRPVDHMVV G* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 1.0e-40 | 56 | 236 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 1.0e-49 | 28 | 311 | 304 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 1.0e-67 | 75 | 241 | 179 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB75748.1 | 0 | 1 | 329 | 1 | 339 | pectate lyase-like protein [Arabidopsis thaliana] |
| EMBL | CBI32661.1 | 0 | 1 | 331 | 1 | 329 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_191074.2 | 0 | 1 | 329 | 1 | 329 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002311134.1 | 0 | 1 | 325 | 1 | 325 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526780.1 | 0 | 1 | 312 | 1 | 312 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 2.00386e-43 | 7 | 296 | 12 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 2.00386e-43 | 7 | 296 | 12 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-27 | 9 | 238 | 7 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 5e-25 | 77 | 238 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 2e-23 | 57 | 246 | 46 | 257 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY275282 | 333 | 1 | 332 | 0 |
| JG177860 | 307 | 21 | 327 | 0 |
| DW066041 | 301 | 25 | 325 | 0 |
| DY277275 | 305 | 4 | 308 | 0 |
| DY277275 | 28 | 305 | 332 | 0.001 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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