Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.J01279.1 |
Family | GH28 |
Protein Properties | Length: 443 Molecular Weight: 48325.4 Isoelectric Point: 7.8352 |
Chromosome | Chromosome/Scaffold: 10 Start: 14496564 End: 14499523 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 98 | 431 | 0 |
EAACSAQRAALVVPQSKTYRLTPITFSGPCKSDVTVKIYGTIEASTDQSAYQKDPRQWLKFENLENLAVEGGGYINGNGETWWKKSCKRDPNLPCKDAPT ALTFQECNNLRVADLSIKNAQQMHLVFQKCVNVRAVNLQITAPEESPNTDGIHVTETQNIIIDSCVIGTGDDCISIVSGSRKVQATDITCGPGHGISIGS LGADKSADYVSDVLINKAKLSGTKNGVRIKTWQGGSGYARNIKFENIAMTNVENPIIIDQNYCDQKESCPQQAAAVQVMDVSYMNIRGTSASEDAIKFDC SKNHPCQDIFLQDVNLQSGSSVKSTEASCSNVKL |
Full Sequence |
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Protein Sequence Length: 443 Download |
MYLQKLQFCV SIILITSSSF CFGSHRNDLY NPMARLSSVR TASRGRTSYY DSDSWRQLML 60 KRSRAASSST SLKLVNVNDY GARGDGSDDT EAFMKAWEAA CSAQRAALVV PQSKTYRLTP 120 ITFSGPCKSD VTVKIYGTIE ASTDQSAYQK DPRQWLKFEN LENLAVEGGG YINGNGETWW 180 KKSCKRDPNL PCKDAPTALT FQECNNLRVA DLSIKNAQQM HLVFQKCVNV RAVNLQITAP 240 EESPNTDGIH VTETQNIIID SCVIGTGDDC ISIVSGSRKV QATDITCGPG HGISIGSLGA 300 DKSADYVSDV LINKAKLSGT KNGVRIKTWQ GGSGYARNIK FENIAMTNVE NPIIIDQNYC 360 DQKESCPQQA AAVQVMDVSY MNIRGTSASE DAIKFDCSKN HPCQDIFLQD VNLQSGSSVK 420 STEASCSNVK LTQTGRVSPH CT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 7.0e-101 | 74 | 442 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 1.0e-101 | 70 | 434 | 372 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-124 | 101 | 430 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-145 | 62 | 442 | 385 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-146 | 53 | 439 | 390 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK81876.1 | 0 | 55 | 441 | 61 | 443 | polygalacturonase PG1 [Vitis vinifera] |
EMBL | CAN64004.1 | 0 | 50 | 442 | 45 | 442 | hypothetical protein [Vitis vinifera] |
EMBL | CBI29907.1 | 0 | 1 | 442 | 1 | 442 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002277214.1 | 0 | 1 | 442 | 48 | 489 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282759.1 | 0 | 50 | 442 | 45 | 442 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-21 | 163 | 418 | 110 | 366 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 3jur_D | 9e-19 | 75 | 415 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 9e-19 | 75 | 415 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 9e-19 | 75 | 415 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 9e-19 | 75 | 415 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |