y
Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.J01349.2 |
Family | GT5 |
Protein Properties | Length: 733 Molecular Weight: 81440.5 Isoelectric Point: 5.3621 |
Chromosome | Chromosome/Scaffold: 10 Start: 16128326 End: 16135123 |
Description | starch synthase 2 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 300 | 414 | 5.3e-34 |
NIILVAAECAPWSKTGGLGDVAGSLPKALARRGHRVMVVAPRYGNYAEAQQIGERKRYKVDGQDHEVSYFQAYIDGVDFVFIDSPMFRHIENNIYGGNRV DILKRMVLFCKAAVE | |||
GT5 | 414 | 725 | 0 |
EGRGPVDDFSFVDLPPHYIDLFKLYDPLGGDHFNIFAAGLKTADRVVTVSHGYAWELKTSEGGWGLHNIINEMDWKLRGIVNGIDTKEWSPQYDVHLKSD GYTNYSLENLQTGKAQCKEAFQRELGLPVHPNVPLLGFIGRLDHQKGVDLIAEAVPWLMGQDVQLVMLGTGRQDLEQMLRQFEGQHRDKIRGWVGFSVKM AHRITAASDILLMPSRFEPCGLNQLYAMSYGTIPVVHAVGGLRDTVEPFDPFNNTGLGWTFDSAEANKLINALGYCLMTYRQYKESWEGIQRRGMTKDLS WDNAARNYEEVL |
Full Sequence |
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Protein Sequence Length: 733 Download |
MASLGSLQFL SEPKAESSLL LYCINRRRPR SGSCGYWPRK SPVPLHLRGL SCGFSRSRDA 60 EDGWLKCSFC RGRMSGLYDR GQFLSVRAAG MGSAEGDDGD SLETEDKLQA TIEKSKRVLA 120 MQRDLLNQIA ERRKLVSTIK NSTISATEAE TAYENGMSTS SHQDVASTSD NYTTFEDNVL 180 GQTNGQSFSG SPLHSTKEAP ESVLTKEPDK AERNLESQFS SKVTPSSSDS PEHSNNISSV 240 SVQSTEMPSF LSSTLEVEPL EVEQNESLKE SSLQNVDNET ADPVSEDMEP PPLAGPNVMN 300 IILVAAECAP WSKTGGLGDV AGSLPKALAR RGHRVMVVAP RYGNYAEAQQ IGERKRYKVD 360 GQDHEVSYFQ AYIDGVDFVF IDSPMFRHIE NNIYGGNRVD ILKRMVLFCK AAVEGRGPVD 420 DFSFVDLPPH YIDLFKLYDP LGGDHFNIFA AGLKTADRVV TVSHGYAWEL KTSEGGWGLH 480 NIINEMDWKL RGIVNGIDTK EWSPQYDVHL KSDGYTNYSL ENLQTGKAQC KEAFQRELGL 540 PVHPNVPLLG FIGRLDHQKG VDLIAEAVPW LMGQDVQLVM LGTGRQDLEQ MLRQFEGQHR 600 DKIRGWVGFS VKMAHRITAA SDILLMPSRF EPCGLNQLYA MSYGTIPVVH AVGGLRDTVE 660 PFDPFNNTGL GWTFDSAEAN KLINALGYCL MTYRQYKESW EGIQRRGMTK DLSWDNAARN 720 YEEVLVAAKY QW* 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14099 | PRK14099 | 3.0e-66 | 412 | 729 | 324 | + glycogen synthase; Provisional | ||
COG0297 | GlgA | 2.0e-113 | 299 | 723 | 481 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 5.0e-140 | 299 | 724 | 481 | + glycogen synthase; Provisional | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 6.0e-176 | 300 | 725 | 482 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
TIGR02095 | glgA | 0 | 299 | 728 | 481 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACL98481.1 | 0 | 1 | 732 | 1 | 792 | starch synthase IIa precursor [Lotus japonicus] |
Swiss-Prot | Q43847 | 0 | 86 | 732 | 44 | 767 | SSY2_SOLTU RecName: Full=Granule-bound starch synthase 2, chloroplastic/amyloplastic; AltName: Full=Granule-bound starch synthase II; Short=GBSS-II; Short=SS II; Flags: Precursor |
RefSeq | XP_002278470.1 | 0 | 1 | 732 | 1 | 772 | PREDICTED: similar to starch synthase [Vitis vinifera] |
RefSeq | XP_002324061.1 | 0 | 1 | 732 | 1 | 742 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002531856.1 | 0 | 1 | 732 | 1 | 754 | starch synthase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 368 | 726 | 146 | 509 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3vuf_A | 0.000000000000003 | 299 | 415 | 10 | 135 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3vue_A | 0 | 368 | 726 | 146 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 3vue_A | 0.000000000000003 | 299 | 415 | 10 | 135 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 3d1j_A | 0 | 299 | 724 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO781048 | 331 | 403 | 733 | 0 |
HO795490 | 314 | 420 | 733 | 0 |
HO777841 | 319 | 415 | 733 | 0 |
HO777841 | 338 | 86 | 414 | 0 |
HO781048 | 41 | 358 | 398 | 0.046 |
Sequence Alignments (This image is cropped. Click for full image.) |
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