Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.J02132.1 |
Family | PL1 |
Protein Properties | Length: 452 Molecular Weight: 50933.9 Isoelectric Point: 10.4297 |
Chromosome | Chromosome/Scaffold: 10 Start: 27274036 End: 27275774 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 154 | 370 | 0 |
KRPLWIIFARSMVIRLNQELMVASHKTIDGRGANVHIAFGAGITIQFVRNVIIHNIRIHDIVTRPGGIIRDAVDHVGIRTMSDGDGISIFGSTNIWIDHV SMKRCQDGLIDAIEGSTAITISNGHYTHHNDTLMFNLHPGTYVQVMLFGASDLYPRDKIMQVTVAFNHFGKGLIQRMPRCRWGFFHVVNNDYTHWLMYAI GGSSQPTIISQGNRFIA |
Full Sequence |
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Protein Sequence Length: 452 Download |
MAAMKLVGFI LALSLAVLVP SLEAHIKEFD EYWQKRAEEA SQAALEAFNP EPENVTAQFN 60 ANVNKVLDGN NSTRRQLHMH KYSGPCLATN PIDRCWRCRK NWAKDRKRLA KCVLGFGRKT 120 TGGLKGKYYV VYDCSDNDVV NPKPGTLRHA VIQKRPLWII FARSMVIRLN QELMVASHKT 180 IDGRGANVHI AFGAGITIQF VRNVIIHNIR IHDIVTRPGG IIRDAVDHVG IRTMSDGDGI 240 SIFGSTNIWI DHVSMKRCQD GLIDAIEGST AITISNGHYT HHNDTLMFNL HPGTYVQVML 300 FGASDLYPRD KIMQVTVAFN HFGKGLIQRM PRCRWGFFHV VNNDYTHWLM YAIGGSSQPT 360 IISQGNRFIA PPNLAAKEVT KRDYATPDVW RSWTWRSQGD LLINGAFFVQ SGQPLKKKYG 420 RKDMIKAKPG TFVRRLTRFS GTLNCKPKKR C* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR04247 | NosD_copper_fam | 0.002 | 135 | 283 | 179 | + nitrous oxide reductase family maturation protein NosD. Members of this family include NosD, a repetitive periplasmic protein required for the maturation of the copper-containing enzyme nitrous-oxide reductase. NosD appears to be part of a complex with NosF (an ABC transporter family ATP-binding protein) and NosY (a six-helix transmembrane protein in the ABC-2 permease family). However, NosDFY-like complexes appear to occur also in species whose copper requiring enzymes are something other than nitrous-oxide reductase. | ||
pfam04431 | Pec_lyase_N | 8.0e-19 | 25 | 77 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 4.0e-25 | 120 | 414 | 315 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-61 | 171 | 368 | 221 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-75 | 165 | 372 | 219 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 17 | 451 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 17 | 451 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 16 | 451 | 18 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 11 | 451 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 5 | 451 | 7 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 90 | 443 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 90 | 443 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.000000000000007 | 159 | 359 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000004 | 173 | 368 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.0000000002 | 175 | 380 | 146 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |