Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.J02266.1 |
Family | PL1 |
Protein Properties | Length: 407 Molecular Weight: 44918.5 Isoelectric Point: 6.9662 |
Chromosome | Chromosome/Scaffold: 10 Start: 28528853 End: 28531133 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 120 | 325 | 0 |
IQDEPLWIIFKRDMVIRLKNELVMNSFKTIDGRGASVHISDGPCITIHFATNIIIHGINIHDCKQSGNAMIRNSPGHYGWWTVSDGDGVSIFDSKHIWVD HCSLSNCRDGLIDANHGSTAITISNNYMTHHDKVMLLGSSDSYTRDKDMQVTVAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSASPTIYSQ GNRFLA |
Full Sequence |
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Protein Sequence Length: 407 Download |
MGCDDNVLSL VLLFSLLVVP HLVLSAPLHD PDVVVEEVNR SINASRRNLA YLSCGTGNPI 60 DDCWRCDPNW ESNRQRLADC AIGFGKNALG GKNGQIYVVT DSGDDDPVSP RPGTLRHAVI 120 QDEPLWIIFK RDMVIRLKNE LVMNSFKTID GRGASVHISD GPCITIHFAT NIIIHGINIH 180 DCKQSGNAMI RNSPGHYGWW TVSDGDGVSI FDSKHIWVDH CSLSNCRDGL IDANHGSTAI 240 TISNNYMTHH DKVMLLGSSD SYTRDKDMQV TVAFNHFGEG LVQRMPRCRL GYFHVVNNDY 300 THWEMYAIGG SASPTIYSQG NRFLAPDDRS KKEVTKHENA GEGEWKDWNW RSEGDMFLNG 360 AFFRQSGAGA SSKYARASSL SGRPSSMVAS MTYTAGVLSC RKGSRC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 7.0e-28 | 130 | 323 | 218 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 9.0e-70 | 138 | 323 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-79 | 132 | 327 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF63756.1 | 0 | 26 | 406 | 18 | 398 | AF243475_1 pectate lyase [Vitis vinifera] |
GenBank | ACU21247.1 | 0 | 19 | 406 | 17 | 406 | unknown [Glycine max] |
RefSeq | XP_002268976.1 | 0 | 25 | 406 | 22 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300069.1 | 0 | 10 | 406 | 7 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526952.1 | 0 | 1 | 406 | 1 | 396 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 58 | 399 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 58 | 399 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 6e-18 | 127 | 325 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 0.000000000000002 | 184 | 335 | 169 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 2bsp_A | 0.000000000000004 | 184 | 335 | 169 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant |