Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.K00113.1 |
Family | CE8 |
Protein Properties | Length: 373 Molecular Weight: 40224.5 Isoelectric Point: 5.8273 |
Chromosome | Chromosome/Scaffold: 11 Start: 1711402 End: 1713240 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 77 | 360 | 0 |
RVSQDGSGDFKTVTEAINSIPAGNSQRVIVSIAGGVYKEKITIERTKPFVTLYGSPNDMPKLTYSGTAQQYGTVDSASIIVESDYFVGANLIIENSAPRP DGKAAGGQAVALRTSGDKAAFYNCRMLGFQDTLCDDRGFHFFKDCYIEGTVDFIFGSGTSIYLNTELRVLGDSGLSVITAQARQSNTEDTGYSLVHCSIT GTGNGTFLGRAWMPSPRVIFSYTDMSSVINPLGWSDNFHPERQRTVTFAEYKCSGEGSTPAGRAKFAKQLSDADVQTFISLSYI |
Full Sequence |
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Protein Sequence Length: 373 Download |
MANKLEFRGL PPLAIAILSL LIALAQIAVS DDKIPIPADK SQVNAWFQQN VQAFEARKGT 60 LDPNLEAAEA IPPKVIRVSQ DGSGDFKTVT EAINSIPAGN SQRVIVSIAG GVYKEKITIE 120 RTKPFVTLYG SPNDMPKLTY SGTAQQYGTV DSASIIVESD YFVGANLIIE NSAPRPDGKA 180 AGGQAVALRT SGDKAAFYNC RMLGFQDTLC DDRGFHFFKD CYIEGTVDFI FGSGTSIYLN 240 TELRVLGDSG LSVITAQARQ SNTEDTGYSL VHCSITGTGN GTFLGRAWMP SPRVIFSYTD 300 MSSVINPLGW SDNFHPERQR TVTFAEYKCS GEGSTPAGRA KFAKQLSDAD VQTFISLSYI 360 VGSKWLLPPP RV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 5.0e-86 | 74 | 366 | 303 | + pectinesterase | ||
PLN02432 | PLN02432 | 2.0e-87 | 75 | 366 | 292 | + putative pectinesterase | ||
PLN02773 | PLN02773 | 9.0e-88 | 71 | 360 | 303 | + pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-103 | 67 | 368 | 310 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 29 | 371 | 343 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309337.1 | 0 | 12 | 370 | 10 | 367 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002318197.1 | 0 | 18 | 370 | 11 | 363 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511043.1 | 0 | 1 | 370 | 1 | 364 | Pectinesterase-1 precursor, putative [Ricinus communis] |
RefSeq | XP_002511045.1 | 0 | 1 | 370 | 1 | 365 | Pectinesterase-1 precursor, putative [Ricinus communis] |
RefSeq | XP_002530224.1 | 0 | 10 | 372 | 8 | 368 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 9.99967e-42 | 68 | 366 | 2 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3e-33 | 78 | 366 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 6e-23 | 75 | 354 | 8 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 6e-23 | 75 | 354 | 8 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 6e-23 | 75 | 354 | 8 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |