Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.K00562.2 |
Family | GH28 |
Protein Properties | Length: 445 Molecular Weight: 49349.6 Isoelectric Point: 6.2302 |
Chromosome | Chromosome/Scaffold: 11 Start: 6264565 End: 6269283 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 49 | 394 | 0 |
ADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKGAVILGSTNTEDWPIVDPLPSYGRGRELPGRRHRSLIFGRNLTDVVITGENGTIDGQGSMWWERFRNK TLDYTRPHLVELMNSTGVVISNLTFLNSPFWTIHPVYCSHVIVQNVTIRAPLDSPNTDGIDPDSSDDVCIEDCYISTGDDVIAIKSGWDEYGTSYGRPSK NIVIRRLIGETHSSGIAIGSEMSGGVSDVHAEDIVFFNSTTGIRIKTSPGRGGYVRNIFISNVSLANVKVAIRFTGRYGEHPDESYDPKALPKIERITFK DIHGENITVAGLMEGIEGDNFINICLYNITLSVNSISPWNCSNVQG |
Full Sequence |
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Protein Sequence Length: 445 Download |
MGSSHCKRHN DERIRPHSVT ITEFGAVGDG VTLNTKAFQN AIFYLNSFAD KGGAKLFVPA 60 GRWLTGSFDL ISHLTLWLDK GAVILGSTNT EDWPIVDPLP SYGRGRELPG RRHRSLIFGR 120 NLTDVVITGE NGTIDGQGSM WWERFRNKTL DYTRPHLVEL MNSTGVVISN LTFLNSPFWT 180 IHPVYCSHVI VQNVTIRAPL DSPNTDGIDP DSSDDVCIED CYISTGDDVI AIKSGWDEYG 240 TSYGRPSKNI VIRRLIGETH SSGIAIGSEM SGGVSDVHAE DIVFFNSTTG IRIKTSPGRG 300 GYVRNIFISN VSLANVKVAI RFTGRYGEHP DESYDPKALP KIERITFKDI HGENITVAGL 360 MEGIEGDNFI NICLYNITLS VNSISPWNCS NVQGFSSLVF PQTCELLEES IFPDHCTECY 420 HLLQEHRIRN KGARLLSWWT YLGT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-29 | 2 | 404 | 426 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 1.0e-30 | 16 | 356 | 350 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 1.0e-33 | 17 | 401 | 404 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 6.0e-35 | 117 | 352 | 242 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-70 | 19 | 337 | 342 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37055.1 | 0 | 2 | 438 | 26 | 466 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273855.1 | 0 | 2 | 438 | 77 | 517 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301554.1 | 0 | 6 | 420 | 30 | 444 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320934.1 | 0 | 2 | 410 | 19 | 427 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002535132.1 | 0 | 2 | 438 | 36 | 476 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 13 | 385 | 22 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 13 | 385 | 22 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 13 | 385 | 22 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 13 | 385 | 22 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 4e-26 | 63 | 393 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FE681628 | 293 | 2 | 294 | 0 |
HO797483 | 420 | 15 | 431 | 0 |
CO090976 | 268 | 47 | 313 | 0 |
GO869614 | 310 | 5 | 313 | 0 |
FE674319 | 274 | 54 | 327 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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