Basic Information | |
---|---|
Species | Eucalyptus grandis |
Cazyme ID | Eucgr.K00661.1 |
Family | GH28 |
Protein Properties | Length: 371 Molecular Weight: 39234.4 Isoelectric Point: 7.8406 |
Chromosome | Chromosome/Scaffold: 11 Start: 7397255 End: 7399140 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 42 | 355 | 0 |
AKADGRSDDSQADVNLKVEGAVKAPADLNKFKSQGSWVLFQNIDGLTLSGGGSFDGQGAAAWKENNCAQTGKCNSLPTNLQFTSINNSHVQDITSLNSKL FHVELLNCNNVTLQHVTIDAPEDSLNTDGIHVGRSMGVNIIGADIRTGDDCVSLGDGSQQVHIEGVTCGPGHGISVGSLGKYHDEQPVVGVTVRNCTLTN TMNGIRVKTWPNSPSGVASGMHFEDITVNNVSTPILIDQNYCPYNNCQQKIPSKVKISDVSFRNIRGTSATPLAVKLVCSRGVPCQKVELADINLRYNGR NGTATSQCENVKPT |
Full Sequence |
---|
Protein Sequence Length: 371 Download |
MGSKMMARAA IFLYLLSLAA AMRTGGVSMI GQAEIDVRKF GAKADGRSDD SQADVNLKVE 60 GAVKAPADLN KFKSQGSWVL FQNIDGLTLS GGGSFDGQGA AAWKENNCAQ TGKCNSLPTN 120 LQFTSINNSH VQDITSLNSK LFHVELLNCN NVTLQHVTID APEDSLNTDG IHVGRSMGVN 180 IIGADIRTGD DCVSLGDGSQ QVHIEGVTCG PGHGISVGSL GKYHDEQPVV GVTVRNCTLT 240 NTMNGIRVKT WPNSPSGVAS GMHFEDITVN NVSTPILIDQ NYCPYNNCQQ KIPSKVKISD 300 VSFRNIRGTS ATPLAVKLVC SRGVPCQKVE LADINLRYNG RNGTATSQCE NVKPTIAGKL 360 SLPICAGPRS * |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 3.0e-66 | 35 | 353 | 362 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 3.0e-70 | 37 | 365 | 372 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 1.0e-71 | 52 | 351 | 301 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-106 | 46 | 357 | 312 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-134 | 11 | 366 | 395 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL32525.1 | 0 | 31 | 365 | 67 | 437 | polygalacturonase; pectinase [Arabidopsis thaliana] |
EMBL | CAA51692.1 | 0 | 31 | 365 | 67 | 437 | exopolygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002274096.1 | 0 | 33 | 358 | 26 | 384 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002274125.1 | 0 | 31 | 366 | 24 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282563.1 | 0 | 31 | 366 | 24 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 5e-20 | 87 | 352 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-20 | 87 | 352 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-20 | 87 | 352 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 5e-20 | 87 | 352 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 5e-20 | 87 | 352 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |