Basic Information | |
---|---|
Species | Eucalyptus grandis |
Cazyme ID | Eucgr.K00662.1 |
Family | GH28 |
Protein Properties | Length: 395 Molecular Weight: 42055.8 Isoelectric Point: 7.5885 |
Chromosome | Chromosome/Scaffold: 11 Start: 7400905 End: 7402452 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 50 | 380 | 0 |
KKACASTTRAKVFIAGGTFALSEVVLEGPCKAHVEFEIRGRLQAPADPSRFKTDGWVVFQRIDGLTVSGGGTFDGQGKIAWGQNDCDKNTNCRTLPTNLR FNFVSNAIIHNVTTLDSKNFHVNVLGAKNLTFENFHVNAPGDSVNTDGIHIGRSLGVNILDTNIKTGDDCVSLGDGSRQITVRGVTCGPGHGISVGSLGK YDNEEPVSGVFVTNCTITGATNGARIKTWLASKIGIATDMHFQDVQMNDVANPVLIDQGYCPFNQCQAQIPSLVKISNVSFERIRGTSSTKVAVKIACSK RIPCEGVEIADINLVYKGPDGPATSECSNVR |
Full Sequence |
---|
Protein Sequence Length: 395 Download |
MAIKSYIGAL LLLLLSFSST INAQVFQVEN YSAKGGGIPD ITQSLLGAWK KACASTTRAK 60 VFIAGGTFAL SEVVLEGPCK AHVEFEIRGR LQAPADPSRF KTDGWVVFQR IDGLTVSGGG 120 TFDGQGKIAW GQNDCDKNTN CRTLPTNLRF NFVSNAIIHN VTTLDSKNFH VNVLGAKNLT 180 FENFHVNAPG DSVNTDGIHI GRSLGVNILD TNIKTGDDCV SLGDGSRQIT VRGVTCGPGH 240 GISVGSLGKY DNEEPVSGVF VTNCTITGAT NGARIKTWLA SKIGIATDMH FQDVQMNDVA 300 NPVLIDQGYC PFNQCQAQIP SLVKISNVSF ERIRGTSSTK VAVKIACSKR IPCEGVEIAD 360 INLVYKGPDG PATSECSNVR PLISGMQNPL ACAEI |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-78 | 28 | 379 | 358 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 4.0e-84 | 19 | 392 | 377 | + polygalacturonase | ||
PLN02793 | PLN02793 | 5.0e-92 | 24 | 392 | 376 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-116 | 53 | 379 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-128 | 22 | 393 | 374 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89476.1 | 0 | 1 | 392 | 1 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 14 | 392 | 10 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 14 | 392 | 10 | 393 | polygalacturonase [Salix gilgiana] |
Swiss-Prot | P24548 | 0 | 40 | 393 | 1 | 355 | PGLR_OENOR RecName: Full=Exopolygalacturonase; Short=ExoPG; AltName: Full=Pectinase; AltName: Full=Galacturan 1,4-alpha-galacturonidase |
RefSeq | XP_002329175.1 | 0 | 9 | 392 | 14 | 393 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-17 | 116 | 309 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000000001 | 114 | 336 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000001 | 114 | 336 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000001 | 114 | 336 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000001 | 114 | 336 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |