Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.K00664.1 |
Family | GH28 |
Protein Properties | Length: 393 Molecular Weight: 42269.5 Isoelectric Point: 7.8221 |
Chromosome | Chromosome/Scaffold: 11 Start: 7413023 End: 7416083 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 49 | 378 | 0 |
KKACASTTRPKVLIPGGTFTLSEVVLEGPCKAHVEFEVHARLLAPPELSRFKTDGWVVFHNIDGLTMLGGTFDGQGKMAWAQNDCIKNKNCRMLPMNLRF NVVSNAIIHDVTSVDSKYFHVTVLGCKNVTFQHFHVNAPGNSVNTDGIHIGRSLGVNILDTDIKTGDDCVSLGDGSRQVTVKGLTCGPGHGISVGSLGKY DNEEPVSGVFVTNCTINGATNGVRIKTWPASKIGIATDMHFEDIQMNNVFNPVLIDQGYCPWNQCQAQIPSLVKISNVSFKRIRGTSATKVAVKIACSKR IPCEGVEIADINLVYKGPDGPATSECSNVR |
Full Sequence |
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Protein Sequence Length: 393 Download |
MAIKSYVGAL LLLLSFSSTI IAQVFQIENY NVTGGGIPDI TQSLLDAWKK ACASTTRPKV 60 LIPGGTFTLS EVVLEGPCKA HVEFEVHARL LAPPELSRFK TDGWVVFHNI DGLTMLGGTF 120 DGQGKMAWAQ NDCIKNKNCR MLPMNLRFNV VSNAIIHDVT SVDSKYFHVT VLGCKNVTFQ 180 HFHVNAPGNS VNTDGIHIGR SLGVNILDTD IKTGDDCVSL GDGSRQVTVK GLTCGPGHGI 240 SVGSLGKYDN EEPVSGVFVT NCTINGATNG VRIKTWPASK IGIATDMHFE DIQMNNVFNP 300 VLIDQGYCPW NQCQAQIPSL VKISNVSFKR IRGTSATKVA VKIACSKRIP CEGVEIADIN 360 LVYKGPDGPA TSECSNVRPL ISGMQNPRAY DA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-78 | 27 | 377 | 358 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-88 | 23 | 387 | 376 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 5.0e-90 | 18 | 376 | 362 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 6.0e-113 | 52 | 377 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 7.0e-128 | 25 | 388 | 367 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89476.1 | 0 | 1 | 384 | 1 | 387 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 13 | 384 | 10 | 387 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 13 | 384 | 10 | 387 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89479.1 | 0 | 24 | 384 | 30 | 387 | polygalacturonase [Salix gilgiana] |
RefSeq | XP_002329175.1 | 0 | 3 | 386 | 6 | 389 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.000000000000001 | 118 | 338 | 117 | 338 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.0000000000007 | 117 | 341 | 77 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.0000000000007 | 117 | 341 | 77 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.0000000000007 | 117 | 341 | 77 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.0000000000007 | 117 | 341 | 77 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |