| Basic Information | |
|---|---|
| Species | Eucalyptus grandis |
| Cazyme ID | Eucgr.K01816.3 |
| Family | GH28 |
| Protein Properties | Length: 477 Molecular Weight: 52472.4 Isoelectric Point: 7.4447 |
| Chromosome | Chromosome/Scaffold: 11 Start: 22528968 End: 22531919 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 79 | 402 | 0 |
| CTCRVAFPPGRYLTATVRLKSGVVLDIQSGATVLGGTEIGNYPREADRWYVILAEGARDVGITGGGAVDGQGLEFVRRFDERKNVMVSWNKTGACLGDEC RPRLVGFVGCTNVHVWNVSLNQPAYWCLHIVRCVNTFIHDVSIYGDFNTPNNDGIDIDDSNHTVITRCKIDTGDDAICPKTYTGPLYNLTATDCWIRTKS SAIKLGSASWFDFRGLVFDNITIVESHRGLGMQIRDGGNVNDITFSNIKISTRYYHPSWWGRAEPIYITTCPRHSWSKEGAVSNIRFINITADSENGVFL SGSKGGLLRNLRFSNVNLTYKRWT | |||
| Full Sequence |
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| Protein Sequence Length: 477 Download |
| MAVPPPSLLR SALRLLVYLL PFAQWPRPPP PPPPVPGPGA SFSVRDFGAA GDGCRYDTAA 60 IQDAIDACHA HAAAAAAGCT CRVAFPPGRY LTATVRLKSG VVLDIQSGAT VLGGTEIGNY 120 PREADRWYVI LAEGARDVGI TGGGAVDGQG LEFVRRFDER KNVMVSWNKT GACLGDECRP 180 RLVGFVGCTN VHVWNVSLNQ PAYWCLHIVR CVNTFIHDVS IYGDFNTPNN DGIDIDDSNH 240 TVITRCKIDT GDDAICPKTY TGPLYNLTAT DCWIRTKSSA IKLGSASWFD FRGLVFDNIT 300 IVESHRGLGM QIRDGGNVND ITFSNIKIST RYYHPSWWGR AEPIYITTCP RHSWSKEGAV 360 SNIRFINITA DSENGVFLSG SKGGLLRNLR FSNVNLTYKR WTSYEGGLAD YRPGCQGLVK 420 HGMAGIIMEH IKGLEIENVN MRWADEKSWQ WDNPLDFRPS TVNGISFRDF HSDLYS* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 4.0e-9 | 42 | 396 | 386 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 1.0e-9 | 118 | 272 | 155 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 6.0e-11 | 42 | 399 | 376 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-15 | 91 | 398 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 3.0e-38 | 39 | 329 | 326 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB41176.1 | 0 | 35 | 476 | 28 | 472 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_567055.1 | 0 | 35 | 476 | 28 | 472 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002282920.1 | 0 | 7 | 472 | 4 | 464 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002282925.1 | 0 | 7 | 472 | 4 | 459 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 32 | 475 | 6 | 442 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 7e-18 | 38 | 390 | 24 | 382 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 7e-18 | 38 | 390 | 24 | 382 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 7e-18 | 38 | 390 | 24 | 382 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 7e-18 | 38 | 390 | 24 | 382 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 0.000000000000003 | 43 | 325 | 158 | 484 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
