| Basic Information | |
|---|---|
| Species | Eucalyptus grandis |
| Cazyme ID | Eucgr.K01816.4 |
| Family | GH28 |
| Protein Properties | Length: 343 Molecular Weight: 37047 Isoelectric Point: 6.8308 |
| Chromosome | Chromosome/Scaffold: 11 Start: 22528968 End: 22531919 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 79 | 329 | 0 |
| CTCRVAFPPGRYLTATVRLKSGVVLDIQSGATVLGGTEIGNYPREADRWYVILAEGARDVGITGGGAVDGQGLEFVRRFDERKNVMVSWNKTGACLGDEC RPRLVGFVGCTNVHVWNVSLNQPAYWCLHIVRCVNTFIHDVSIYGDFNTPNNDGIDIDDSNHTVITRCKIDTGDDAICPKTYTGPLYNLTATDCWIRTKS SAIKLGSASWFDFRGLVFDNITIVESHRGLGMQIRDGGNVNDITFSNIKIS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 343 Download |
| MAVPPPSLLR SALRLLVYLL PFAQWPRPPP PPPPVPGPGA SFSVRDFGAA GDGCRYDTAA 60 IQDAIDACHA HAAAAAAGCT CRVAFPPGRY LTATVRLKSG VVLDIQSGAT VLGGTEIGNY 120 PREADRWYVI LAEGARDVGI TGGGAVDGQG LEFVRRFDER KNVMVSWNKT GACLGDECRP 180 RLVGFVGCTN VHVWNVSLNQ PAYWCLHIVR CVNTFIHDVS IYGDFNTPNN DGIDIDDSNH 240 TVITRCKIDT GDDAICPKTY TGPLYNLTAT DCWIRTKSSA IKLGSASWFD FRGLVFDNIT 300 IVESHRGLGM QIRDGGNVND ITFSNIKIST RFQGWAAEKS EI* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 3.0e-8 | 42 | 328 | 310 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 9.0e-10 | 118 | 272 | 155 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-10 | 91 | 329 | 249 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-10 | 42 | 255 | 219 | + polygalacturonase/glycoside hydrolase family protein | ||
| COG5434 | PGU1 | 2.0e-38 | 39 | 329 | 326 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL38256.1 | 0 | 35 | 316 | 28 | 309 | putative protein [Arabidopsis thaliana] |
| EMBL | CAB41176.1 | 0 | 35 | 332 | 28 | 325 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_567055.1 | 0 | 35 | 332 | 28 | 325 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002282920.1 | 0 | 7 | 332 | 4 | 322 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 32 | 332 | 6 | 299 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2e-17 | 38 | 338 | 24 | 368 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2e-17 | 38 | 338 | 24 | 368 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2e-17 | 38 | 338 | 24 | 368 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2e-17 | 38 | 338 | 24 | 368 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 8e-16 | 43 | 325 | 158 | 484 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
