| Basic Information | |
|---|---|
| Species | Eucalyptus grandis |
| Cazyme ID | Eucgr.K02336.1 |
| Family | PL1 |
| Protein Properties | Length: 320 Molecular Weight: 35029.7 Isoelectric Point: 9.5612 |
| Chromosome | Chromosome/Scaffold: 11 Start: 30471535 End: 30472877 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 39 | 240 | 0 |
| EVWITFERDMTINLQKPLLVSSFTAIDGRGVTVHITGGGCLLVYKATDVIIHGLYIHNCQAQPPSQVIGPDSKILPLGQVDGDAIRLVTATKVWIDHNTL YACQDGLLDVTRGSNQVTISNNWFRDQDKVMLLGHDDGYIRDRNMKVTIVYNHFGPNCNQRMPRVRHGYAHVANNLYQGWEQYAIGGSSGPSIKSEANLF IA | |||
| Full Sequence |
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| Protein Sequence Length: 320 Download |
| MTGNIGKGTV RYTVTDPSDD PLRPRPGTLR YGATLINGEV WITFERDMTI NLQKPLLVSS 60 FTAIDGRGVT VHITGGGCLL VYKATDVIIH GLYIHNCQAQ PPSQVIGPDS KILPLGQVDG 120 DAIRLVTATK VWIDHNTLYA CQDGLLDVTR GSNQVTISNN WFRDQDKVML LGHDDGYIRD 180 RNMKVTIVYN HFGPNCNQRM PRVRHGYAHV ANNLYQGWEQ YAIGGSSGPS IKSEANLFIA 240 PKGGNKEVTW RLGSHASKTA WSFYSVGDVF ENGASFRKKG RLGGAKPHYN KQQSFTVADA 300 QSVRSLTSSS GVLKCSRTC* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 7.0e-26 | 58 | 238 | 193 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-57 | 49 | 238 | 198 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-66 | 47 | 242 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 1 | 317 | 1 | 316 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 1 | 317 | 50 | 365 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 1 | 318 | 32 | 351 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 1 | 318 | 32 | 349 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 1 | 248 | 60 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 6 | 313 | 35 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 6 | 313 | 35 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 4e-17 | 56 | 238 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 1e-16 | 76 | 239 | 82 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1jta_A | 0.00000000000003 | 121 | 238 | 144 | 287 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DT575750 | 225 | 92 | 316 | 0 |
| FD757999 | 228 | 54 | 281 | 0 |
| DR808308 | 226 | 1 | 219 | 0 |
| EC964189 | 306 | 15 | 317 | 0 |
| FG474249 | 191 | 125 | 315 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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