Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.K03600.1 |
Family | PL1 |
Protein Properties | Length: 445 Molecular Weight: 48552.8 Isoelectric Point: 8.2212 |
Chromosome | Chromosome/Scaffold: 11 Start: 45281649 End: 45286733 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 158 | 363 | 0 |
IQDRPLWIVFKRDMVITLKQELLMNSFKTIDGRGANVHIANGACITIQYITNVIIHGVHVHDCKSTGKAMVRSSPSHYGWRTMADGDGISLFGASHVWID HNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVKDKTMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQ GNRYLA |
Full Sequence |
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Protein Sequence Length: 445 Download |
MPASPRWLSV SFAAFLVLLV CAGGGASGRE LSGSKIEEQT GELQGVKNSS MAGRISVERN 60 EHAVDDPEEV ASMVDMSIRN STARRNLGFF SCGTGNPIDD CWRCDPKWYL RRKRLADCAI 120 GFGRNAVGGR DGKYYVVSDP GDDDPVNPRP GTLRHAVIQD RPLWIVFKRD MVITLKQELL 180 MNSFKTIDGR GANVHIANGA CITIQYITNV IIHGVHVHDC KSTGKAMVRS SPSHYGWRTM 240 ADGDGISLFG ASHVWIDHNS LSNCADGLID AIMGSTAITI SNNYFTHHNE VMLLGHSDSY 300 VKDKTMQVTI AYNHFGEGLI QRMPRCRHGY FHVVNNDYTH WEMYAIGGSA EPTINSQGNR 360 YLAPTNPFAK EVTKRVETST SMWKSWNWRS EGDLMLNGAF FTPSGAGAGA GYSRASSLGA 420 KSSSLVGTLT SDSGVLVCRR GRAC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13229 | Beta_helix | 0.001 | 190 | 302 | 116 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
COG3866 | PelB | 5.0e-26 | 183 | 376 | 208 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 7.0e-71 | 176 | 361 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 6.0e-81 | 170 | 364 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX88800.1 | 0 | 1 | 444 | 1 | 437 | ripening-related pectate lyase [Mangifera indica] |
GenBank | ADD62392.1 | 0 | 30 | 444 | 29 | 445 | pectase lyase [Prunus persica] |
DDBJ | BAF43573.1 | 0 | 30 | 444 | 9 | 425 | pectate lyase [Prunus persica] |
EMBL | CAN75298.1 | 0 | 30 | 444 | 26 | 445 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002265100.1 | 0 | 30 | 444 | 26 | 445 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 96 | 437 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 96 | 437 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 7e-16 | 165 | 362 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000006 | 186 | 338 | 135 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.000000000002 | 186 | 338 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |