Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.L00823.1 |
Family | GH28 |
Protein Properties | Length: 394 Molecular Weight: 41257.1 Isoelectric Point: 8.5426 |
Chromosome | Chromosome/Scaffold: 70 Start: 8343 End: 10945 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 60 | 387 | 0 |
AACGSEKPAMISVPPGRFLVGGATFNGPCKNNAIRWHIQGVITAPTDYSVLGNVGTWLLFQYVDGMSISGGILDGQGAALWACKASGKNCPSGATTILFS NSKNIEVSKLMSLNSQLFHIVIYGCQNVRLRGVKVFASGDSPNTDGVHVQLSSGVTIKSSKIGTGDDCVSVGAGTTNLWIENVMCGPGHGISIGSLGKDL EEAGVENVTVKNVMFGGTQNGLRIKSWGRPSTGFAKNILFQHALMSNVKNPIVIDQNYCPNKKNCPGQFSGVKISDVTYQNIHGTSATEVAVKFDCSPKN PCTGIRLEDVKLTYKNDRRPAQASCVNA |
Full Sequence |
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Protein Sequence Length: 394 Download |
MSSHSTLGVA SLLFMAFHIG ITSSQAAIAA TAAEYDVVSL GAKPDGVTDS TRAFVGAWLA 60 ACGSEKPAMI SVPPGRFLVG GATFNGPCKN NAIRWHIQGV ITAPTDYSVL GNVGTWLLFQ 120 YVDGMSISGG ILDGQGAALW ACKASGKNCP SGATTILFSN SKNIEVSKLM SLNSQLFHIV 180 IYGCQNVRLR GVKVFASGDS PNTDGVHVQL SSGVTIKSSK IGTGDDCVSV GAGTTNLWIE 240 NVMCGPGHGI SIGSLGKDLE EAGVENVTVK NVMFGGTQNG LRIKSWGRPS TGFAKNILFQ 300 HALMSNVKNP IVIDQNYCPN KKNCPGQFSG VKISDVTYQN IHGTSATEVA VKFDCSPKNP 360 CTGIRLEDVK LTYKNDRRPA QASCVNAGGL AFGL |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 2.0e-90 | 37 | 371 | 342 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 9.0e-91 | 37 | 387 | 358 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-94 | 62 | 387 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-107 | 35 | 387 | 359 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-139 | 35 | 394 | 360 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC22689.1 | 0 | 3 | 393 | 8 | 390 | polygalacturonase [Pyrus communis] |
DDBJ | BAF42034.1 | 0 | 3 | 393 | 8 | 390 | polygalacturonase3 [Pyrus communis] |
EMBL | CAH18935.1 | 0 | 3 | 393 | 8 | 390 | polygalacturonase [Pyrus communis] |
RefSeq | XP_002529090.1 | 0 | 10 | 394 | 7 | 386 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529092.1 | 0 | 4 | 394 | 2 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-21 | 130 | 372 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 5e-16 | 128 | 372 | 77 | 332 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 0.000000000000001 | 129 | 384 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000001 | 129 | 384 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000001 | 129 | 384 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |