Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.L00826.1 |
Family | GH28 |
Protein Properties | Length: 381 Molecular Weight: 40199.9 Isoelectric Point: 10.1261 |
Chromosome | Chromosome/Scaffold: 70 Start: 92418 End: 94386 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 41 | 368 | 0 |
SSACGSAVPATVYVPQGNFVLKPVVFTGPCKNRILFLIAGTLIAPSNYWSLGNSGYWILFNKVTRVTVHGGTLNARGSGYWACKSSGKSCPVGARSISLE GSSNVVISGITSMNSQNIHMAINNCMNVLIQNVRIKAPSQSPNTDGIHIRSSTGVTIASSSFMTGDDCISIGPGSKNVWIQRVVCGPGHGISVGSLAGNA NEEGVENVTVTGAVFTGTQNGVRIKSWGRPSTGFARTISFRNIIMKNVFNPIIIDQNYCPSNTNCPNQNSGVKISRVTYRNIKGTSATPVAMNFICSPTN PCSGIALQNIELKHLTAQATSYCKNAGG |
Full Sequence |
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Protein Sequence Length: 381 Download |
MAKSFLVINS SINTASYNVL SYGAKADGRT DSTMAFQRVW SSACGSAVPA TVYVPQGNFV 60 LKPVVFTGPC KNRILFLIAG TLIAPSNYWS LGNSGYWILF NKVTRVTVHG GTLNARGSGY 120 WACKSSGKSC PVGARSISLE GSSNVVISGI TSMNSQNIHM AINNCMNVLI QNVRIKAPSQ 180 SPNTDGIHIR SSTGVTIASS SFMTGDDCIS IGPGSKNVWI QRVVCGPGHG ISVGSLAGNA 240 NEEGVENVTV TGAVFTGTQN GVRIKSWGRP STGFARTISF RNIIMKNVFN PIIIDQNYCP 300 SNTNCPNQNS GVKISRVTYR NIKGTSATPV AMNFICSPTN PCSGIALQNI ELKHLTAQAT 360 SYCKNAGGSS RGIVVPRSCF * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 7.0e-88 | 44 | 366 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-89 | 15 | 377 | 370 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 3.0e-101 | 13 | 379 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 3.0e-103 | 19 | 380 | 370 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 7.0e-155 | 4 | 380 | 378 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002331632.1 | 0 | 5 | 380 | 12 | 391 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 14 | 380 | 24 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529094.1 | 0 | 15 | 380 | 24 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529095.1 | 0 | 5 | 380 | 11 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529097.1 | 0 | 1 | 380 | 9 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-21 | 110 | 333 | 124 | 344 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 3e-17 | 14 | 369 | 18 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 3e-16 | 102 | 365 | 69 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-16 | 102 | 365 | 69 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-16 | 102 | 365 | 69 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY281549 | 315 | 16 | 328 | 0 |
JZ193571 | 286 | 16 | 300 | 0 |
JZ193548 | 298 | 5 | 300 | 0 |
JZ191937 | 299 | 82 | 380 | 0 |
FC899369 | 295 | 16 | 308 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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