Basic Information | |
---|---|
Species | Eucalyptus grandis |
Cazyme ID | Eucgr.L01551.1 |
Family | GH28 |
Protein Properties | Length: 397 Molecular Weight: 41634.2 Isoelectric Point: 5.1955 |
Chromosome | Chromosome/Scaffold: 260 Start: 35632 End: 37527 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 48 | 380 | 0 |
WKEACASTTPAKVLIPGGTFALTEVALDGPCKAPVEFELQGTLKAPADPSLFKTDGWVVFQRIDGLTVSGGGTFDGQGKTAWGQNDCAKNTNCRTLPTNL RFNFVTNALIHDVTTLDSKYFQVNVLGAKNMTFQNFHVNAPADSINTDGIHIGRSDGVNILDSDIKTGDDCVSLGDGSRQITVKGVTCGPGHGISVGSLG KYENEEPVEGVFVTNCTIIGADNGVRIKTWPASKPGTASDMHFEDIQMDNVLNPVILDQGYCPFDQCKAGVPSLIKISKVSFKKIRGTSASQVAVKVLCS QSVPCQEVEIADIDLVYNGPEGPATSECANVKP |
Full Sequence |
---|
Protein Sequence Length: 397 Download |
MAMKSYVGAL LLLLSFSSSI NAQVFNVASY GAKGDGSSDI SQALLSAWKE ACASTTPAKV 60 LIPGGTFALT EVALDGPCKA PVEFELQGTL KAPADPSLFK TDGWVVFQRI DGLTVSGGGT 120 FDGQGKTAWG QNDCAKNTNC RTLPTNLRFN FVTNALIHDV TTLDSKYFQV NVLGAKNMTF 180 QNFHVNAPAD SINTDGIHIG RSDGVNILDS DIKTGDDCVS LGDGSRQITV KGVTCGPGHG 240 ISVGSLGKYE NEEPVEGVFV TNCTIIGADN GVRIKTWPAS KPGTASDMHF EDIQMDNVLN 300 PVILDQGYCP FDQCKAGVPS LIKISKVSFK KIRGTSASQV AVKVLCSQSV PCQEVEIADI 360 DLVYNGPEGP ATSECANVKP VLSGKLNPAA CAKVVS* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-84 | 26 | 379 | 360 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 1.0e-90 | 24 | 391 | 370 | + polygalacturonase | ||
PLN02793 | PLN02793 | 9.0e-95 | 23 | 391 | 376 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-121 | 52 | 391 | 340 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-134 | 21 | 392 | 375 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ADC53480.1 | 0 | 1 | 392 | 1 | 401 | polygalacturonase [Gossypium hirsutum] |
RefSeq | XP_002274125.1 | 0 | 24 | 392 | 27 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282563.1 | 0 | 24 | 392 | 27 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282573.1 | 0 | 24 | 392 | 27 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002329175.1 | 0 | 10 | 391 | 16 | 393 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 4e-18 | 118 | 391 | 77 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-18 | 118 | 391 | 77 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 4e-18 | 118 | 391 | 77 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 4e-18 | 118 | 391 | 77 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 4e-18 | 118 | 391 | 77 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |