Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.L01949.1 |
Family | GH28 |
Protein Properties | Length: 382 Molecular Weight: 39612 Isoelectric Point: 7.7898 |
Chromosome | Chromosome/Scaffold: 482 Start: 3520 End: 5942 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 40 | 367 | 0 |
AACGSEMPATISVPPGRFLVGGATFSGPCKNNAIRWQIEGVIKAPADYNVLGNVGTWLLFQHVDGMSISGGVLDGQGAALWACKASGKSCPGGATTIVFS DSRNIAVSKLTSLNSQLFHIVINGCQNVRLQGMKVFASGDSPNTDGIHVQLSSGVTIMNSKIGTGDDCVSVGAGTTNLWIENVACGPGHGISIGSLGKEL EEAGVENVTVKNVVFRGTQNGLRIKSWGRPSTGFAKNILFQHAVMSNVNNPIVIDQNYCPNNINCPGQFSGVKISDVTYQDIHGTSATEVAVKFDCSLKN PCTGIRLEDVKLAYKNNQQPAQASCVNA |
Full Sequence |
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Protein Sequence Length: 382 Download |
MISSQAAIAV SAAKYNVVSL GAKPDGVTDS TQAFVGTWLA ACGSEMPATI SVPPGRFLVG 60 GATFSGPCKN NAIRWQIEGV IKAPADYNVL GNVGTWLLFQ HVDGMSISGG VLDGQGAALW 120 ACKASGKSCP GGATTIVFSD SRNIAVSKLT SLNSQLFHIV INGCQNVRLQ GMKVFASGDS 180 PNTDGIHVQL SSGVTIMNSK IGTGDDCVSV GAGTTNLWIE NVACGPGHGI SIGSLGKELE 240 EAGVENVTVK NVVFRGTQNG LRIKSWGRPS TGFAKNILFQ HAVMSNVNNP IVIDQNYCPN 300 NINCPGQFSG VKISDVTYQD IHGTSATEVA VKFDCSLKNP CTGIRLEDVK LAYKNNQQPA 360 QASCVNAGGL AFGLVQPSSC L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-87 | 16 | 377 | 369 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-92 | 42 | 367 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 6.0e-94 | 17 | 381 | 372 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 6.0e-107 | 15 | 380 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 6.0e-145 | 15 | 381 | 367 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD33834.1 | 0 | 1 | 381 | 17 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
DDBJ | BAC22689.1 | 0 | 1 | 381 | 20 | 398 | polygalacturonase [Pyrus communis] |
DDBJ | BAF42034.1 | 0 | 1 | 381 | 20 | 398 | polygalacturonase3 [Pyrus communis] |
EMBL | CAH18935.1 | 0 | 1 | 381 | 20 | 398 | polygalacturonase [Pyrus communis] |
RefSeq | XP_002529090.1 | 0 | 11 | 381 | 25 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-21 | 110 | 351 | 117 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 4e-16 | 108 | 347 | 77 | 327 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1rmg_A | 0.000000000000007 | 16 | 351 | 22 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 0.00000000000001 | 109 | 364 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000001 | 109 | 364 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JZ191937 | 299 | 83 | 381 | 0 |
DY281549 | 315 | 15 | 328 | 0 |
JZ194028 | 290 | 75 | 364 | 0 |
JZ192826 | 286 | 79 | 364 | 0 |
JZ192324 | 273 | 83 | 355 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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