Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.L02033.1 |
Family | GH28 |
Protein Properties | Length: 367 Molecular Weight: 37825 Isoelectric Point: 7.7799 |
Chromosome | Chromosome/Scaffold: 544 Start: 3945 End: 6371 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 40 | 352 | 0 |
AACGSEMPATISVPPGRFLVGGATFSGPCKNNAIRWQIEGVIKAPADYNVLGNVGTWLLFQHVDGMSISGGVLDGQGAALWACKASGKSCPGGSTTIVFS NSRNIAVSKLTSLNSQLFHIVINGCQNVRLQGMKVLASGDSPNTDGVHVQLSSGVTITNSKIGTGDDCVSVGAGTTNLWIENVACGPGRGISIGSLGKEL EEAGVQNVTVKNVVLSTGFAKNILFQHAVMSNVNNPIVIDQNYCPNNINCPGQFSGVKISDVTYQDIHGTSATEVAVKFDCSLKNPCTGIRLEDVKLAYK NNQQPAQASCVNA |
Full Sequence |
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Protein Sequence Length: 367 Download |
MISSQAAIAV SAAKYNVVSL GAKPDGVTDS TKAFVGTWLA ACGSEMPATI SVPPGRFLVG 60 GATFSGPCKN NAIRWQIEGV IKAPADYNVL GNVGTWLLFQ HVDGMSISGG VLDGQGAALW 120 ACKASGKSCP GGSTTIVFSN SRNIAVSKLT SLNSQLFHIV INGCQNVRLQ GMKVLASGDS 180 PNTDGVHVQL SSGVTITNSK IGTGDDCVSV GAGTTNLWIE NVACGPGRGI SIGSLGKELE 240 EAGVQNVTVK NVVLSTGFAK NILFQHAVMS NVNNPIVIDQ NYCPNNINCP GQFSGVKISD 300 VTYQDIHGTS ATEVAVKFDC SLKNPCTGIR LEDVKLAYKN NQQPAQASCV NAGGLAFGLV 360 QPSSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 8.0e-79 | 16 | 362 | 368 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-81 | 42 | 352 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 5.0e-85 | 17 | 366 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-95 | 15 | 365 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 1.0e-128 | 15 | 366 | 367 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC22689.1 | 0 | 8 | 366 | 27 | 398 | polygalacturonase [Pyrus communis] |
DDBJ | BAF42034.1 | 0 | 8 | 366 | 27 | 398 | polygalacturonase3 [Pyrus communis] |
EMBL | CAH18935.1 | 0 | 8 | 366 | 27 | 398 | polygalacturonase [Pyrus communis] |
RefSeq | XP_002310385.1 | 0 | 8 | 366 | 26 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529090.1 | 0 | 11 | 366 | 25 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.0000000000007 | 110 | 336 | 117 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 0.00000000001 | 108 | 332 | 77 | 327 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1rmg_A | 0.00000000002 | 16 | 336 | 22 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 0.0000000005 | 109 | 349 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.0000000005 | 109 | 349 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY281549 | 315 | 15 | 313 | 0 |
JZ191937 | 299 | 83 | 366 | 0 |
JZ194028 | 290 | 75 | 349 | 0 |
JZ192826 | 286 | 79 | 349 | 0 |
JZ192324 | 273 | 83 | 340 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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