y
Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.L02344.1 |
Family | AA7 |
Protein Properties | Length: 484 Molecular Weight: 53859 Isoelectric Point: 8.8164 |
Chromosome | Chromosome/Scaffold: 822 Start: 10796 End: 12247 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 73 | 458 | 0 |
NLRFNSSDTPKPTLILTALHESHVQAAIVCARKLSVQMKIRSGGHDFEGISYVSISSPFFILDMINFRSVDVDIETETAWVQAGAILGEVYYGIAAKSKV HGFPAGVCPMVGIGGHLSGGGYGNMMRKYGLSVDNIVDACMINVKGKILDRESMGEDLFWAIRGGGGASFGVILAYKINLVHVPEMVTVFRIQRTREQNA TAVVYQWEQVAHKLHEDLFIRLVMDVVAGKNTGEKTVRARFIALFLGDAQRLLSMISDGFPELGLRSSDCIEMSWVESTLYWMNFPIGTPVDALLSRAPK GLMHLKRKSDYVRHIISKDELELLWKRMIDLERPILTFNPYGGKMGKIPTTETPFPHRAGNLWKVQYATNWHEEGHEAAQHNIELT |
Full Sequence |
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Protein Sequence Length: 484 Download |
MGTSFPNSKT LSLFSLQALF TASFSSPSTA FANETLSQCL ISHSQASHPI TSAILYTPAN 60 SSYSTVLQSY IRNLRFNSSD TPKPTLILTA LHESHVQAAI VCARKLSVQM KIRSGGHDFE 120 GISYVSISSP FFILDMINFR SVDVDIETET AWVQAGAILG EVYYGIAAKS KVHGFPAGVC 180 PMVGIGGHLS GGGYGNMMRK YGLSVDNIVD ACMINVKGKI LDRESMGEDL FWAIRGGGGA 240 SFGVILAYKI NLVHVPEMVT VFRIQRTREQ NATAVVYQWE QVAHKLHEDL FIRLVMDVVA 300 GKNTGEKTVR ARFIALFLGD AQRLLSMISD GFPELGLRSS DCIEMSWVES TLYWMNFPIG 360 TPVDALLSRA PKGLMHLKRK SDYVRHIISK DELELLWKRM IDLERPILTF NPYGGKMGKI 420 PTTETPFPHR AGNLWKVQYA TNWHEEGHEA AQHNIELTRK LYNYMTPFVS KNPRAAFLNY 480 RDL* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0277 | GlcD | 1.0e-9 | 96 | 338 | 256 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 3.0e-15 | 84 | 222 | 140 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN60572.1 | 0 | 38 | 483 | 34 | 477 | hypothetical protein [Vitis vinifera] |
EMBL | CAN80091.1 | 0 | 38 | 483 | 34 | 477 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002269462.1 | 0 | 38 | 483 | 34 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002270585.1 | 0 | 38 | 483 | 34 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002523152.1 | 0 | 32 | 483 | 8 | 456 | Reticuline oxidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 4dns_B | 0 | 55 | 483 | 26 | 442 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 55 | 483 | 26 | 442 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3vte_A | 0 | 34 | 483 | 5 | 460 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3tsj_B | 0 | 32 | 483 | 7 | 442 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3tsj_A | 0 | 32 | 483 | 7 | 442 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |