Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.L03153.1 |
Family | GH28 |
Protein Properties | Length: 394 Molecular Weight: 41504.1 Isoelectric Point: 5.3877 |
Chromosome | Chromosome/Scaffold: 2156 Start: 5363 End: 7009 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 48 | 380 | 0 |
WKEACASTTPAKVLIPGGTFALTEVALDGPCKAPVEFELQGTLKAPTDPSLFKTDGWVVFQHIDGLTMSGGGTFDGQGKTAWGQNDCAKNTNCRTLPTNL RFNFVTNALIHDVTTLDSKYFQVNVLGAKNMTFQNFHVNAPADSINTDGIHIGRSDGVNILDSDIKTGDDCVSLGDGSRQITVKGVTCGPGHGISVGSLG KYENEEPVEGVFVTNCTIIGADNGVRIKTWPASKPGTASDMHFEDIQMDNVLNPVILDQGYCPFNQCKAGVPSLIKISKVSFKKIRGTSASQVAVKVLCS QSVPCQEVEIADIDLVYNGPEGPATSECANVKP |
Full Sequence |
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Protein Sequence Length: 394 Download |
MAMKSYVGAL LLLLSFSSSI NAQVFNVATY GAKGDGSSDI SQALLSAWKE ACASTTPAKV 60 LIPGGTFALT EVALDGPCKA PVEFELQGTL KAPTDPSLFK TDGWVVFQHI DGLTMSGGGT 120 FDGQGKTAWG QNDCAKNTNC RTLPTNLRFN FVTNALIHDV TTLDSKYFQV NVLGAKNMTF 180 QNFHVNAPAD SINTDGIHIG RSDGVNILDS DIKTGDDCVS LGDGSRQITV KGVTCGPGHG 240 ISVGSLGKYE NEEPVEGVFV TNCTIIGADN GVRIKTWPAS KPGTASDMHF EDIQMDNVLN 300 PVILDQGYCP FNQCKAGVPS LIKISKVSFK KIRGTSASQV AVKVLCSQSV PCQEVEIADI 360 DLVYNGPEGP ATSECANVKP VLSGKLNPAA CAKV |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02218 | PLN02218 | 2.0e-83 | 26 | 379 | 360 | + polygalacturonase ADPG |
PLN02155 | PLN02155 | 4.0e-90 | 24 | 391 | 370 | + polygalacturonase |
PLN02793 | PLN02793 | 6.0e-94 | 23 | 391 | 376 | + Probable polygalacturonase |
pfam00295 | Glyco_hydro_28 | 4.0e-121 | 52 | 391 | 340 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02188 | PLN02188 | 6.0e-134 | 21 | 392 | 375 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ADC53480.1 | 0 | 1 | 392 | 1 | 401 | polygalacturonase [Gossypium hirsutum] |
DDBJ | BAA89477.1 | 0 | 24 | 391 | 30 | 393 | polygalacturonase [Salix gilgiana] |
RefSeq | XP_002274125.1 | 0 | 24 | 392 | 27 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282573.1 | 0 | 24 | 392 | 27 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002329175.1 | 0 | 10 | 391 | 16 | 393 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-18 | 113 | 378 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-18 | 113 | 378 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-18 | 113 | 378 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-18 | 113 | 378 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-18 | 113 | 378 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |