Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.L03486.1 |
Family | GH28 |
Protein Properties | Length: 397 Molecular Weight: 42869.9 Isoelectric Point: 8.8227 |
Chromosome | Chromosome/Scaffold: 3356 Start: 1457 End: 3788 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 88 | 385 | 0 |
WNEACRSTGRVNLLIPKGTYLLGPVRFAGPCTDVSSLTGHLKALTNLSQYGSDAGWFGWVEGLSLTGGGVFDGRGAEAWLYNNCLVDFDCKLLPPNIKFI SMNKTSVRGVTSVNSKSFHIALISAPADSPNTDGIHIERSSGVYISKSRIRTGDDCISIGQGNSLVRITNINCGPDCNMTGTANGIRIKTWPDSPDSSIA TNMTFENIRMNNVTNPIIIDQTYCPFASCSFKEPSRVKLSDIYFRNIRGTSSSPLAVALECSRGFPCQDIYLQDVRLDLLDGKRDMNVTSSCKNLKAK |
Full Sequence |
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Protein Sequence Length: 397 Download |
MRLENGVRLR LPLFATMLFL GGVVEGRGGA LTASGGLVSA SSLGDRTADR VSHSDWKRRV 60 VSVVFDVKRF GALANGRTDD RKAFEAAWNE ACRSTGRVNL LIPKGTYLLG PVRFAGPCTD 120 VSSLTGHLKA LTNLSQYGSD AGWFGWVEGL SLTGGGVFDG RGAEAWLYNN CLVDFDCKLL 180 PPNIKFISMN KTSVRGVTSV NSKSFHIALI SAPADSPNTD GIHIERSSGV YISKSRIRTG 240 DDCISIGQGN SLVRITNINC GPDCNMTGTA NGIRIKTWPD SPDSSIATNM TFENIRMNNV 300 TNPIIIDQTY CPFASCSFKE PSRVKLSDIY FRNIRGTSSS PLAVALECSR GFPCQDIYLQ 360 DVRLDLLDGK RDMNVTSSCK NLKAKYIGTQ IPPPCA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 2.0e-64 | 62 | 395 | 381 | + polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-69 | 67 | 392 | 371 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-72 | 64 | 395 | 377 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-79 | 92 | 383 | 333 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 0 | 62 | 396 | 373 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA16789.1 | 0 | 83 | 395 | 1 | 361 | polygalacturonase-like protein [Arabidopsis thaliana] |
EMBL | CBI37725.1 | 0 | 6 | 396 | 7 | 388 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_193552.1 | 0 | 64 | 395 | 34 | 413 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002279959.1 | 0 | 6 | 396 | 7 | 420 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312795.1 | 0 | 62 | 396 | 40 | 410 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.00000000002 | 152 | 364 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.00000003 | 150 | 382 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000003 | 150 | 382 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000003 | 150 | 382 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.00000003 | 150 | 382 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |