| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G002034_T01 |
| Family | GH28 |
| Protein Properties | Length: 538 Molecular Weight: 56853.3 Isoelectric Point: 7.2026 |
| Chromosome | Chromosome/Scaffold: 8 Start: 73851489 End: 73854311 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 163 | 485 | 0 |
| AAACKVEASTVLVPSGLEFVVGPISFSGPYCKPNILFQLDGTILAQTSARAWGSAGLLQWLEFTKLTGIAVQGSGVINGRGQDWWTYADPNDADDESVEM LLPRTKPTALRFYGSSNVTVAGITIVNSSQCHLKFDSCEGVMVHDLSVSSPEDSPNTDGIHLQNSRGVDIHHATLACGDDCISIQTGCSDVNIHSVNCGP GHGISIGGLGRFNTKACVSNVTVRDVKMFRTTTGVRIKTWQGGSGLVQGVRFSNIQVTEVQTPIMIDQFYCDRATCRNQTSAVAVSGVQYEDVRGTFTVR PAHLACSDSSPCSGITLAGIQLQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 538 Download |
| MTQVKLLSSR VSLPLFKHPL SFPPQAQKPC PSLFCSSSFS VMLRLKALTF LLLLLLLALC 60 SGVHLCDARS GTRWSRTTRG GGSGAAPSAS AAAIGRKGKA RSSGSSHRQS GEGSRSPTDG 120 DPVQGDGSQA PPPQDTTVFS VVEFGAKGDG VTDDTQAFEA AWAAACKVEA STVLVPSGLE 180 FVVGPISFSG PYCKPNILFQ LDGTILAQTS ARAWGSAGLL QWLEFTKLTG IAVQGSGVIN 240 GRGQDWWTYA DPNDADDESV EMLLPRTKPT ALRFYGSSNV TVAGITIVNS SQCHLKFDSC 300 EGVMVHDLSV SSPEDSPNTD GIHLQNSRGV DIHHATLACG DDCISIQTGC SDVNIHSVNC 360 GPGHGISIGG LGRFNTKACV SNVTVRDVKM FRTTTGVRIK TWQGGSGLVQ GVRFSNIQVT 420 EVQTPIMIDQ FYCDRATCRN QTSAVAVSGV QYEDVRGTFT VRPAHLACSD SSPCSGITLA 480 GIQLQPLPLP QHRRLSYDPF CWQAFGELYT PTVPPIPCLQ IGRPAAGNSV LSDGDLC* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 6.0e-64 | 126 | 479 | 360 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 7.0e-65 | 139 | 482 | 348 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-69 | 137 | 479 | 348 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-74 | 171 | 482 | 313 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-86 | 128 | 519 | 395 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF79104.1 | 0 | 42 | 537 | 1 | 496 | unknown [Zea mays] |
| GenBank | ACN27989.1 | 0 | 145 | 537 | 29 | 421 | unknown [Zea mays] |
| GenBank | ACR36869.1 | 0 | 153 | 537 | 37 | 421 | unknown [Zea mays] |
| GenBank | EEC79746.1 | 0 | 43 | 537 | 3 | 534 | hypothetical protein OsI_21117 [Oryza sativa Indica Group] |
| RefSeq | NP_001141617.1 | 0 | 1 | 537 | 1 | 537 | hypothetical protein LOC100273736 [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 6e-26 | 229 | 432 | 109 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 1e-19 | 238 | 484 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-19 | 238 | 484 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-19 | 238 | 484 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-19 | 238 | 484 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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